Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BPRO_RS00905 Genome accession   NC_007948
Coordinates   196113..197684 (-) Length   523 a.a.
NCBI ID   WP_011481156.1    Uniprot ID   Q12H46
Organism   Polaromonas sp. JS666     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 191113..202684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPRO_RS00880 (Bpro_0175) - 191691..192515 (+) 825 WP_011481150.1 glycine zipper 2TM domain-containing protein -
  BPRO_RS00885 (Bpro_0177) - 193033..193749 (+) 717 WP_011481152.1 Crp/Fnr family transcriptional regulator -
  BPRO_RS00890 (Bpro_0178) - 193979..194692 (+) 714 WP_011481153.1 Crp/Fnr family transcriptional regulator -
  BPRO_RS00895 (Bpro_0179) - 194992..195417 (+) 426 WP_157045702.1 hypothetical protein -
  BPRO_RS00900 (Bpro_0180) - 195482..196039 (+) 558 WP_011481155.1 hypothetical protein -
  BPRO_RS00905 (Bpro_0181) comM 196113..197684 (-) 1572 WP_011481156.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BPRO_RS00910 (Bpro_0182) - 197881..198678 (+) 798 WP_011481157.1 TorF family putative porin -
  BPRO_RS00915 (Bpro_0183) glnK 198738..199076 (+) 339 WP_007873831.1 P-II family nitrogen regulator -
  BPRO_RS00920 (Bpro_0184) - 199113..200660 (+) 1548 WP_011481158.1 ammonium transporter -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 55235.28 Da        Isoelectric Point: 7.7092

>NTDB_id=25670 BPRO_RS00905 WP_011481156.1 196113..197684(-) (comM) [Polaromonas sp. JS666]
MSLSLVHSRALLGLEARPVCVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNTGLEFPANKRITVNLAPADLPKDSG
RFDLPIALGILAASGQLDARKLAGYEFAGELSLGGDLRPVRGALAMSLALAHLANDGAMPRDKPGMPARQPKLVLPEGSA
QEAALVPDAEIYRAHHLLDVVRQFLPGDTPPEVLDGWTRIAPIPRREQADYPDLADVKGQAAARRALEIAAAGGHSVLMM
GAPGSGKSMLAQRFAGLLPAMTTEEALESAAVASLGGRFALENWAVRPTCAPHHTASAVALVGGGSPPRPGEISLAHRGV
LFLDELPEFPRAALEALREPLESGTITISRAAQRAEFPARFQLVAAMNPCPCGYLGSSLRACRCSPDQVSRYQGKLSGPL
LDRIDLHVEVGALAADELVNTPPGEASASIRGRVVQARERAIARQGSTNQALEGQAIDAQCQLDDAAAKFLNTAATRLGW
SGRSIHRCLKVARTIADLAGAATVQVTHVAEAVQYRRALKAAH

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=25670 BPRO_RS00905 WP_011481156.1 196113..197684(-) (comM) [Polaromonas sp. JS666]
ATGAGCTTGTCTTTAGTGCACAGCCGTGCCCTGCTGGGACTGGAAGCACGTCCGGTGTGCGTCGAAGTGCACCTGGCAAA
CGGCTTGCCCAGCTTCACCCTGGTGGGGCTGGCAGAAACCGAGGTGAAGGAAGCACGCGAGCGGGTGCGCTCGGCCATTC
AGAACACCGGGCTGGAGTTTCCGGCCAACAAGAGGATCACGGTGAATCTGGCACCTGCGGACCTGCCCAAGGACTCCGGC
CGCTTCGATTTGCCGATTGCCCTGGGCATTCTGGCCGCCAGCGGCCAGCTGGACGCCCGCAAGCTGGCGGGCTACGAGTT
CGCGGGGGAATTGTCTTTGGGCGGCGACCTGCGGCCTGTAAGAGGCGCACTGGCCATGAGCCTGGCATTGGCGCACCTCG
CAAACGATGGCGCCATGCCCCGCGACAAGCCCGGCATGCCGGCCAGGCAACCCAAATTGGTGCTGCCCGAAGGCAGTGCC
CAGGAGGCAGCGCTGGTTCCCGACGCCGAAATTTACCGGGCGCACCATTTGCTGGACGTGGTCAGGCAATTTCTGCCGGG
CGACACGCCGCCAGAGGTGCTGGACGGCTGGACCCGGATCGCGCCCATCCCGCGCCGGGAGCAGGCAGATTACCCGGATC
TCGCCGACGTCAAGGGCCAGGCCGCTGCCCGGCGGGCGCTCGAAATCGCGGCAGCCGGCGGGCACAGCGTGCTGATGATG
GGTGCACCAGGCTCCGGCAAGTCCATGCTGGCACAGCGCTTTGCCGGCCTGCTGCCCGCCATGACGACCGAGGAGGCGCT
GGAAAGCGCCGCGGTCGCCTCGCTGGGTGGCCGCTTCGCGCTGGAAAACTGGGCCGTGCGGCCCACCTGCGCACCCCACC
ACACAGCCAGCGCCGTGGCCTTGGTGGGCGGCGGCTCGCCGCCCCGGCCGGGCGAGATCTCGCTGGCCCACCGGGGCGTC
CTGTTTCTCGACGAGCTGCCCGAGTTCCCGCGCGCCGCGCTGGAAGCGCTGCGCGAGCCGCTGGAGTCCGGCACCATCAC
GATTTCCCGGGCGGCGCAGCGCGCCGAATTTCCGGCGCGCTTTCAGCTGGTCGCCGCCATGAACCCCTGCCCCTGCGGCT
ACCTGGGCTCCAGCCTGCGCGCCTGCCGCTGCTCGCCCGACCAGGTGTCGCGTTACCAGGGCAAACTCAGCGGCCCCCTG
CTGGACCGGATTGACCTGCATGTAGAGGTCGGTGCGCTGGCCGCCGATGAGTTGGTGAACACGCCGCCCGGCGAGGCCAG
TGCGTCCATCCGGGGCCGGGTAGTCCAGGCCCGCGAGCGCGCCATCGCCCGGCAGGGCAGCACCAACCAGGCCCTGGAAG
GCCAGGCGATTGATGCGCAATGCCAGCTCGATGACGCAGCGGCGAAATTTCTGAACACCGCGGCCACGCGGCTGGGCTGG
TCAGGCCGCAGCATTCACCGGTGCCTGAAGGTGGCAAGAACGATTGCGGACCTGGCGGGTGCGGCCACGGTGCAGGTCAC
GCATGTAGCCGAGGCGGTGCAGTACCGCCGTGCACTCAAGGCCGCTCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(424-516)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q12H46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.182

100

0.526
  comM Vibrio campbellii strain DS40M4

51.351

99.044

0.509
  comM Vibrio cholerae strain A1552

51.252

99.235

0.509
  comM Glaesserella parasuis strain SC1401

50.287

100

0.503
  comM Legionella pneumophila str. Paris

49.14

100

0.491
  comM Legionella pneumophila strain ERS1305867

49.14

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.553

98.853

0.421

Multiple sequence alignment