Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MFLA_RS12375 Genome accession   NC_007947
Coordinates   2596438..2596941 (-) Length   167 a.a.
NCBI ID   WP_011480642.1    Uniprot ID   -
Organism   Methylobacillus flagellatus KT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2591438..2601941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFLA_RS12355 (Mfla_2420) - 2591631..2592812 (-) 1182 WP_011480638.1 type II secretion system F family protein -
  MFLA_RS12360 (Mfla_2421) gspG 2592814..2593242 (-) 429 WP_011480639.1 type II secretion system major pseudopilin GspG -
  MFLA_RS12365 (Mfla_2422) - 2593473..2595251 (+) 1779 WP_195742009.1 EAL domain-containing protein -
  MFLA_RS12370 (Mfla_2423) - 2595309..2596271 (-) 963 WP_048811739.1 PEP-CTERM sorting domain-containing protein -
  MFLA_RS12375 (Mfla_2424) ssb 2596438..2596941 (-) 504 WP_011480642.1 single-stranded DNA-binding protein Machinery gene
  MFLA_RS12380 (Mfla_2425) - 2596944..2598320 (-) 1377 WP_011480643.1 MFS transporter -
  MFLA_RS12385 (Mfla_2426) uvrA 2598413..2601232 (+) 2820 WP_011480644.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18531.43 Da        Isoelectric Point: 5.0338

>NTDB_id=25667 MFLA_RS12375 WP_011480642.1 2596438..2596941(-) (ssb) [Methylobacillus flagellatus KT]
MASVNKVILVGNLGRDPEVRYMPNGEAVANFSIATTDSWKDKNGQRQERTEWHNIVMYRRLAEIAGEYLKKGRPVYIEGR
LQTRKWQTKEGQDRYTTEIIADQMQMLGGRDSGGGGGASYDGGDDFNQDYSQPAPRQQAAPAQRPAPAASKPAGGSNFDD
FEDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=25667 MFLA_RS12375 WP_011480642.1 2596438..2596941(-) (ssb) [Methylobacillus flagellatus KT]
ATGGCATCGGTCAATAAAGTAATCTTGGTAGGCAACCTGGGCCGCGACCCGGAAGTGCGCTATATGCCCAATGGCGAGGC
GGTGGCCAACTTCAGCATTGCCACTACCGACAGCTGGAAAGACAAGAACGGCCAGCGTCAGGAGCGCACCGAATGGCACA
ACATCGTCATGTACCGCAGGTTGGCGGAAATTGCCGGCGAGTACCTGAAGAAGGGGCGCCCGGTCTACATCGAAGGCCGC
CTGCAAACCCGCAAGTGGCAGACCAAGGAAGGCCAGGACCGCTACACCACCGAGATCATCGCCGACCAGATGCAGATGCT
GGGCGGGCGCGATAGCGGCGGCGGTGGCGGAGCGAGCTATGATGGTGGCGACGACTTCAACCAAGACTACAGCCAGCCCG
CCCCCAGGCAACAGGCTGCGCCGGCACAACGCCCCGCGCCTGCCGCATCCAAGCCTGCTGGAGGCAGCAATTTCGATGAT
TTCGAGGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.406

100

0.587
  ssb Vibrio cholerae strain A1552

53.297

100

0.581
  ssb Neisseria gonorrhoeae MS11

55.747

100

0.581
  ssb Neisseria meningitidis MC58

53.073

100

0.569
  ssb Latilactobacillus sakei subsp. sakei 23K

34.857

100

0.365

Multiple sequence alignment