Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | CVS42_RS17425 | Genome accession | NZ_CP024933 |
| Coordinates | 3770874..3771194 (+) | Length | 106 a.a. |
| NCBI ID | WP_100646727.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain X12 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3765874..3776194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVS42_RS17410 (CVS42_17420) | yfbV | 3766312..3766752 (-) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
| CVS42_RS17415 (CVS42_17425) | - | 3767057..3768259 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| CVS42_RS17420 (CVS42_17430) | pta | 3768315..3770495 (+) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| CVS42_RS17425 (CVS42_17435) | comE1/comEA | 3770874..3771194 (+) | 321 | WP_100646727.1 | ComEA family DNA-binding protein | Machinery gene |
| CVS42_RS17430 (CVS42_17440) | galU | 3771291..3772202 (+) | 912 | WP_047436208.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| CVS42_RS17435 (CVS42_17445) | - | 3772416..3773813 (+) | 1398 | WP_021231963.1 | peptide MFS transporter | - |
| CVS42_RS17440 (CVS42_17450) | - | 3773888..3774859 (-) | 972 | WP_100646728.1 | response regulator | - |
| CVS42_RS17445 (CVS42_17455) | - | 3775150..3775848 (+) | 699 | WP_100646729.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11330.32 Da Isoelectric Point: 9.6564
>NTDB_id=256453 CVS42_RS17425 WP_100646727.1 3770874..3771194(+) (comE1/comEA) [Aeromonas veronii strain X12]
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=256453 CVS42_RS17425 WP_100646727.1 3770874..3771194(+) (comE1/comEA) [Aeromonas veronii strain X12]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50 |
100 |
0.528 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.903 |
100 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
47.059 |
96.226 |
0.453 |
| comEA | Vibrio cholerae C6706 |
47.059 |
96.226 |
0.453 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comEA | Legionella pneumophila str. Paris |
40.404 |
93.396 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.404 |
93.396 |
0.377 |