Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SDE_RS14060 Genome accession   NC_007912
Coordinates   3411190..3413373 (-) Length   727 a.a.
NCBI ID   WP_011469164.1    Uniprot ID   -
Organism   Saccharophagus degradans 2-40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406190..3418373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDE_RS14045 (Sde_2684) - 3407909..3409393 (-) 1485 WP_011469161.1 SPOR domain-containing protein -
  SDE_RS14050 (Sde_2685) aroB 3409428..3410516 (-) 1089 WP_011469162.1 3-dehydroquinate synthase -
  SDE_RS14055 (Sde_2686) aroK 3410678..3411187 (-) 510 WP_011469163.1 shikimate kinase AroK -
  SDE_RS14060 (Sde_2687) pilQ 3411190..3413373 (-) 2184 WP_011469164.1 type IV pilus secretin PilQ family protein Machinery gene
  SDE_RS14065 (Sde_2688) - 3413377..3413916 (-) 540 WP_049762653.1 pilus assembly protein PilP -
  SDE_RS14070 (Sde_2689) - 3413924..3414538 (-) 615 WP_011469166.1 type 4a pilus biogenesis protein PilO -
  SDE_RS14075 (Sde_2690) - 3414540..3415103 (-) 564 WP_011469167.1 PilN domain-containing protein -
  SDE_RS14080 (Sde_2691) pilM 3415105..3416172 (-) 1068 WP_011469168.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78350.46 Da        Isoelectric Point: 4.3105

>NTDB_id=25576 SDE_RS14060 WP_011469164.1 3411190..3413373(-) (pilQ) [Saccharophagus degradans 2-40]
MFTQNTKLILIAGLLAFSGLVNGASLQDLRFAELPGAKAEIRMLFDSVPNAPQGYTIEQPARIVLDFSSTTNSLAQKKYS
VSVGDVDSAVVLDAGGKTRLIVNLSNLAPYTTRLEGNELIVEIGADVSKSSAVAAHSPAGVVLNNSPEEVRVGAGSAISL
VDFRRGEVGEGKVIISLTNPGVDVDIQEVATGIEVRFLDTELPESLRRKLDVLDFATPVSMVSTLKEGGAAVIHVTANGE
YDYLAYQADNKYVVSVKPLSKAEIEEKKSRFAYVGDKLSLNFQDIQVRSVLQLIADFTDLNLVASDTVSGSITLRLENVP
WDQALDLVLKTKGLDKRQVGSVLMVAPAAEIAARERQEIETQKQLQELAPLRTEYIRVRYANARELFNLFIDTSSGESGG
APGGSGSGSERNSTGSILSERGQAIVDERTNSIILTDTEEKIDDFRRLVDRIDIPVRQVMIEARIVIANSDFRKELGVRM
AGDAVETSVSGDTKFEMTGRLTGLTAADGSGPEALFVDTDGDGVTDDERSLLDSSLVDLGVFNPAGAFTWNVISSNFLLG
MELSALENSGYAEIVSQPKVITGDKQKASIESGTEIPYQEESASGGTTTSFKEAVLKLEVTPQITPDNRVIMDLVINQDS
ISSIDANSGIPVIDITQLETQVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFITPRI
MASNFTE

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=25576 SDE_RS14060 WP_011469164.1 3411190..3413373(-) (pilQ) [Saccharophagus degradans 2-40]
ATGTTCACGCAAAATACAAAATTAATATTAATCGCTGGCTTGTTGGCGTTTTCTGGCCTGGTGAATGGTGCCTCCCTTCA
AGATTTGAGGTTTGCTGAGCTGCCAGGGGCTAAAGCGGAAATTAGAATGTTGTTTGATTCTGTGCCTAATGCGCCTCAGG
GGTATACCATCGAGCAGCCAGCACGAATTGTTTTGGATTTTTCCAGCACCACAAATAGTCTTGCACAAAAGAAATACTCT
GTTTCTGTTGGTGATGTCGACAGTGCCGTAGTGCTTGATGCGGGCGGTAAGACAAGATTGATTGTTAACCTAAGTAATTT
GGCGCCTTATACGACTCGCTTGGAAGGGAATGAGCTAATTGTAGAAATCGGTGCTGATGTATCAAAGTCGAGTGCTGTTG
CTGCACATTCTCCTGCTGGTGTTGTATTAAATAACAGTCCAGAAGAGGTGCGTGTAGGTGCCGGTTCCGCGATTTCACTT
GTGGATTTTCGTCGCGGCGAGGTTGGAGAGGGTAAGGTTATAATCTCCCTCACTAATCCTGGAGTGGATGTGGATATTCA
GGAAGTGGCCACCGGTATTGAGGTGCGTTTCTTGGATACTGAATTGCCTGAAAGTTTGCGCAGGAAGTTAGATGTTTTAG
ATTTTGCAACCCCTGTATCCATGGTTTCCACTTTAAAAGAAGGTGGTGCTGCGGTTATCCATGTGACAGCTAATGGTGAG
TACGATTACCTAGCTTATCAGGCAGATAATAAGTACGTGGTGAGTGTTAAGCCATTAAGTAAGGCCGAGATAGAAGAGAA
GAAGTCTCGCTTTGCTTATGTTGGTGATAAGTTATCCCTAAATTTTCAGGATATTCAGGTTCGGTCCGTTTTGCAGTTGA
TCGCTGACTTTACTGACCTTAACTTGGTTGCCAGCGATACCGTCTCAGGCAGTATTACGCTTCGGTTGGAAAATGTGCCT
TGGGACCAAGCTTTGGATTTGGTGTTAAAAACCAAGGGCTTAGATAAGCGCCAAGTGGGTTCTGTGTTAATGGTAGCGCC
GGCCGCAGAAATTGCAGCTAGAGAGCGGCAAGAGATTGAGACTCAAAAGCAGTTGCAAGAGTTGGCACCGTTGCGTACAG
AGTATATTCGCGTTCGCTATGCCAATGCGCGTGAGTTGTTTAACTTGTTTATTGATACCTCAAGTGGTGAAAGCGGCGGA
GCACCCGGCGGTTCCGGTTCTGGCAGCGAAAGAAACTCAACGGGTAGCATTCTCTCTGAACGAGGTCAGGCGATAGTTGA
TGAGCGCACTAACTCGATAATTTTGACTGACACGGAAGAGAAAATAGACGACTTTCGTAGGTTGGTAGACCGCATTGATA
TCCCTGTTCGTCAGGTGATGATAGAGGCTCGCATCGTGATAGCGAATAGCGACTTCAGGAAAGAGCTTGGAGTGCGAATG
GCTGGTGATGCGGTGGAAACTTCTGTTTCTGGTGACACAAAGTTCGAAATGACAGGGCGTCTTACTGGCTTGACTGCTGC
GGACGGTTCTGGACCAGAAGCCTTGTTCGTCGATACTGATGGTGATGGCGTGACTGATGATGAGCGAAGCTTATTGGATT
CGTCTTTGGTTGATTTAGGAGTGTTTAATCCCGCGGGGGCCTTCACTTGGAACGTTATTAGTTCGAACTTCTTGCTAGGC
ATGGAGCTTTCAGCGTTAGAAAACTCTGGTTACGCAGAAATTGTGTCTCAGCCAAAAGTTATTACTGGTGATAAACAAAA
GGCTTCTATCGAGTCGGGTACTGAAATACCTTATCAAGAGGAGTCGGCAAGTGGTGGTACGACTACGTCATTTAAAGAGG
CTGTACTTAAGCTTGAAGTTACGCCTCAAATTACGCCAGATAATCGAGTAATAATGGATTTGGTTATCAACCAAGATTCA
ATTAGTTCTATCGATGCAAACAGTGGCATACCTGTAATTGATATTACTCAGTTAGAGACTCAGGTGTTAGTGGCTGATGG
CGAAACTATTGTGCTTGGCGGTATCTACACAACCAATACCTTTACCGGTGAGACTAAAGTGCCATTGTTAGGTGATATAC
CCTTTGTAGGCAAATTATTCCGCAACGACTTCAAATCCGAAGATAAGCGCGAAATATTGATCTTTATCACTCCTCGTATT
ATGGCTTCTAACTTTACTGAATAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(301-347)

AMIN domain (AMIN)

(49-123)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-458)

Bacterial type II and III secretion system protein (Secretin)

(565-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.824

99.45

0.486
  pilQ Acinetobacter baumannii D1279779

41.573

97.937

0.407
  pilQ Acinetobacter baumannii strain A118

41.573

97.937

0.407
  comQ Acinetobacter baylyi ADP1

42.346

96.149

0.407

Multiple sequence alignment