Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SDE_RS14080 Genome accession   NC_007912
Coordinates   3415105..3416172 (-) Length   355 a.a.
NCBI ID   WP_011469168.1    Uniprot ID   Q21H78
Organism   Saccharophagus degradans 2-40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410105..3421172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDE_RS14055 (Sde_2686) aroK 3410678..3411187 (-) 510 WP_011469163.1 shikimate kinase AroK -
  SDE_RS14060 (Sde_2687) pilQ 3411190..3413373 (-) 2184 WP_011469164.1 type IV pilus secretin PilQ family protein Machinery gene
  SDE_RS14065 (Sde_2688) - 3413377..3413916 (-) 540 WP_049762653.1 pilus assembly protein PilP -
  SDE_RS14070 (Sde_2689) - 3413924..3414538 (-) 615 WP_011469166.1 type 4a pilus biogenesis protein PilO -
  SDE_RS14075 (Sde_2690) - 3414540..3415103 (-) 564 WP_011469167.1 PilN domain-containing protein -
  SDE_RS14080 (Sde_2691) pilM 3415105..3416172 (-) 1068 WP_011469168.1 pilus assembly protein PilM Machinery gene
  SDE_RS14085 (Sde_2692) - 3416329..3418869 (+) 2541 WP_011469169.1 penicillin-binding protein 1A -
  SDE_RS14090 (Sde_2693) rpmE 3418987..3419199 (-) 213 WP_011469170.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38649.81 Da        Isoelectric Point: 4.2236

>NTDB_id=25577 SDE_RS14080 WP_011469168.1 3415105..3416172(-) (pilM) [Saccharophagus degradans 2-40]
MSILNLFTKKKNPMLGLDVSSTSVKLLELSRHGDSYRVENYAVRALPANSVVEKNINDVEAVAQAVKAVVQTSRTKIKDA
AVAVAGSSVITKVIDMPADLSEDDMELQISIEADQYIPYPLEEVAIDFDIQGPSAKSEDRVDVLLAACRRENVDIRATML
ELADLNPKVIDVEAYTMERAFALVQEQLEDQDEQVVAVLDIGATMTTLSVLVDGKTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEPEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIVIAGGVASLEGLSNLVEEKLGTSVTIAN
PFANMSVSSRVNATALSNDAPSLMIAVGLALRSFE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=25577 SDE_RS14080 WP_011469168.1 3415105..3416172(-) (pilM) [Saccharophagus degradans 2-40]
ATGAGTATTCTCAACTTGTTCACTAAGAAAAAGAACCCCATGCTGGGATTGGACGTGAGTTCAACGTCCGTAAAGCTCTT
GGAGCTTAGCCGGCATGGAGATAGCTATCGGGTTGAGAATTACGCCGTGCGCGCTCTTCCTGCCAACTCCGTGGTCGAGA
AAAACATCAATGATGTGGAGGCTGTCGCGCAGGCGGTCAAAGCTGTTGTGCAAACCTCTCGTACCAAAATCAAAGATGCT
GCCGTCGCGGTCGCAGGCTCGTCGGTTATCACCAAGGTGATCGACATGCCAGCGGATCTGAGCGAAGACGATATGGAGTT
GCAGATATCTATCGAGGCAGACCAATATATTCCCTACCCCTTAGAAGAGGTCGCCATTGACTTCGATATTCAGGGGCCCT
CAGCCAAAAGTGAAGACCGTGTTGATGTGCTTTTGGCTGCGTGCCGAAGGGAAAACGTCGATATTCGCGCAACCATGCTA
GAGCTTGCCGACCTCAACCCTAAAGTGATTGATGTAGAAGCCTATACCATGGAGCGTGCATTTGCGCTTGTGCAAGAGCA
ACTAGAAGATCAAGACGAACAGGTTGTGGCGGTACTCGATATTGGGGCGACCATGACGACGCTAAGTGTGTTGGTCGACG
GAAAAACAATATACACGCGTGAGCAGTTGTTCGGCGGTAAGCAGCTTACGGAAGAAATTCAGCGTCGATACGGCCTTTCT
GCTGAAGAGGCTGGGTTGGCTAAGAAACAAGGTGGCTTACCTGATGATTATGAGCCAGAAGTGTTGGAGCCTTTCAAGGA
TGCTGTGGTTCAACAGGTTACACGTTCTTTGCAGTTCTTCTTTTCCTCGAGCCAGTATAACGATGTAGACCATATCGTTA
TTGCGGGCGGTGTTGCTAGCTTGGAGGGATTGTCTAACCTAGTAGAAGAAAAGTTAGGCACTTCGGTTACCATCGCAAAT
CCATTTGCCAATATGTCTGTTTCCTCTCGCGTTAACGCAACCGCGCTATCGAATGATGCGCCGTCGCTAATGATCGCAGT
TGGTTTGGCGCTAAGGAGCTTCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q21H78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.374

99.437

0.561
  comM Acinetobacter nosocomialis M2

56.374

99.437

0.561
  comM Acinetobacter baylyi ADP1

54.391

99.437

0.541
  pilM Legionella pneumophila strain ERS1305867

44.789

100

0.448

Multiple sequence alignment