Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DMB38_RS27430 Genome accession   NZ_CP029618
Coordinates   6223200..6224822 (+) Length   540 a.a.
NCBI ID   WP_125937387.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6218200..6229822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS27400 (DMB38_27390) lepB 6218406..6219128 (+) 723 WP_125937385.1 signal peptidase I -
  DMB38_RS37205 (DMB38_27395) lepB 6219459..6220365 (+) 907 Protein_5399 signal peptidase I -
  DMB38_RS37210 (DMB38_27400) lepB 6220310..6221410 (+) 1101 WP_240662496.1 signal peptidase I -
  DMB38_RS27415 (DMB38_27405) lepB 6221681..6222405 (+) 725 Protein_5401 signal peptidase I -
  DMB38_RS27420 (DMB38_27410) - 6222402..6222719 (+) 318 WP_101421213.1 DUF2469 domain-containing protein -
  DMB38_RS27425 (DMB38_27415) - 6222838..6223200 (+) 363 WP_047018338.1 YraN family protein -
  DMB38_RS27430 (DMB38_27420) comM 6223200..6224822 (+) 1623 WP_125937387.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DMB38_RS27435 (DMB38_27425) dprA 6224819..6226258 (+) 1440 WP_240662497.1 DNA-processing protein DprA -
  DMB38_RS27440 (DMB38_27430) whiG 6226578..6227387 (+) 810 WP_047018340.1 RNA polymerase sigma factor WhiG -
  DMB38_RS27445 (DMB38_27435) - 6227439..6227993 (+) 555 WP_125939311.1 TetR/AcrR family transcriptional regulator -
  DMB38_RS27450 (DMB38_27440) - 6228016..6228780 (-) 765 WP_125937388.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55722.90 Da        Isoelectric Point: 6.7169

>NTDB_id=255151 DMB38_RS27430 WP_125937387.1 6223200..6224822(+) (comM) [Streptomyces sp. WAC 06738]
MAFARTCSVALVGVEGVVVEIQADLEPGVATFTLVGLPDKSLTESRDRVRAAVVNSGVDWPQKKLTVGLSPAAVPKSGSG
FDLGIACATLGAAGRIAPDALTGLVMVGELSLDGRVRPVPGVLPAVLAAAEAGCRQVVVPEAAAGEATLVPDVSVLGVRS
LRQLIAILNDEPPPDEPAETGGAPAVPSARLAVPGAGWCTPAALGPGAYRPDLADVAGQHRARFALEVAAAGGHHLYLKG
PPGAGKTMLAERLPGLLPPLTETEALEVTAIHSVAGTLPAGQPLVGEAPYAAPHHSATLPALIGGGNALPKPGAVSLAHR
GVLFLDEAPEFSGRILDALRQPLESGHVVVARSAGVVQFPARFLMVLAANPCPCGRFARQEGGCECPPMAIRRYQGRLTG
PLLDRVDLRVAVDAVSRAELSADGERAEPTAEAAARVLAARDRAAARYAGTAWRTNGEVPGHELRRRWHPAPGVLAPAER
DLERGLLTARGLDRVLRVAWTIADLAGHDRPGPEDVAAALELRTGVPRGARTQATREPVE

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=255151 DMB38_RS27430 WP_125937387.1 6223200..6224822(+) (comM) [Streptomyces sp. WAC 06738]
ATGGCCTTCGCCCGCACGTGCTCGGTCGCCCTCGTCGGCGTCGAGGGCGTCGTCGTCGAGATCCAGGCCGACCTGGAGCC
GGGGGTCGCGACGTTCACGCTGGTCGGGCTCCCCGACAAGAGCCTCACGGAAAGCCGCGACCGGGTGCGCGCCGCCGTCG
TCAACTCCGGCGTCGACTGGCCGCAGAAGAAGCTCACCGTCGGCCTCAGCCCCGCCGCCGTACCCAAATCCGGCAGCGGA
TTCGACCTCGGCATCGCCTGCGCCACCCTCGGCGCCGCCGGACGCATCGCGCCCGACGCCCTCACCGGGCTCGTCATGGT
CGGCGAGCTGAGCCTCGACGGCCGCGTCCGGCCCGTCCCCGGCGTGCTGCCCGCCGTGCTCGCCGCCGCGGAGGCAGGCT
GCCGCCAGGTCGTCGTCCCCGAGGCCGCCGCGGGCGAGGCCACCCTCGTCCCCGACGTCTCCGTCCTCGGCGTCCGCAGC
CTGCGCCAGCTCATCGCCATCCTCAACGACGAACCGCCCCCCGACGAGCCCGCGGAAACCGGCGGCGCCCCGGCCGTCCC
GTCCGCCCGGCTCGCCGTGCCCGGAGCCGGCTGGTGCACCCCGGCGGCCCTCGGCCCCGGCGCGTACCGCCCCGACCTCG
CCGACGTCGCGGGGCAGCACCGGGCCCGCTTCGCCCTGGAAGTCGCCGCCGCGGGCGGCCATCACCTGTACCTGAAGGGC
CCCCCGGGAGCGGGCAAGACGATGCTCGCCGAACGGCTGCCCGGGCTGCTGCCGCCCCTGACCGAGACCGAGGCGCTCGA
AGTGACCGCCATCCACTCGGTGGCCGGCACCCTGCCCGCGGGCCAGCCCCTCGTCGGCGAAGCCCCCTACGCCGCCCCGC
ACCACTCCGCGACCCTGCCCGCCCTCATCGGCGGCGGCAACGCGCTGCCCAAGCCGGGAGCCGTCTCCCTGGCCCACCGC
GGCGTGCTCTTCTTGGACGAAGCGCCCGAATTCAGCGGCCGGATCCTCGACGCCCTCAGACAGCCCCTGGAGTCCGGTCA
CGTCGTCGTGGCCCGGTCCGCGGGCGTCGTCCAGTTCCCCGCCCGCTTCCTCATGGTCCTCGCCGCCAACCCCTGCCCCT
GCGGCCGCTTCGCCCGCCAGGAAGGCGGCTGCGAATGCCCGCCCATGGCCATCCGGCGCTACCAGGGCCGGCTCACCGGC
CCGCTCCTCGACCGCGTCGACCTCCGGGTCGCCGTCGACGCCGTCAGCCGCGCCGAGCTCTCGGCCGATGGTGAACGCGC
CGAGCCCACCGCCGAAGCCGCCGCCCGGGTCCTGGCCGCCCGCGACCGCGCCGCCGCGCGCTACGCGGGCACCGCCTGGC
GCACCAACGGCGAAGTCCCCGGCCACGAGCTGCGGCGCCGCTGGCACCCCGCCCCCGGCGTCCTCGCCCCGGCGGAACGC
GACCTCGAACGCGGCCTGCTCACCGCCCGCGGCCTCGATCGGGTCCTCCGCGTCGCCTGGACCATCGCCGACCTCGCGGG
CCACGACCGCCCGGGGCCCGAGGACGTCGCCGCGGCCCTGGAACTCCGCACGGGAGTGCCCCGAGGCGCCCGTACCCAGG
CAACGAGGGAGCCCGTCGAATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(212-419)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(428-523)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.649

97.037

0.394
  comM Haemophilus influenzae Rd KW20

39.354

97.407

0.383
  comM Vibrio cholerae strain A1552

39.504

97.037

0.383
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.504

97.037

0.383
  comM Acinetobacter baylyi ADP1

40.313

94.63

0.381
  comM Glaesserella parasuis strain SC1401

39.122

97.037

0.38
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.641

95.37

0.369
  comM Legionella pneumophila str. Paris

36.911

98.333

0.363
  comM Legionella pneumophila strain ERS1305867

36.911

98.333

0.363