Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   CTZ23_RS13630 Genome accession   NZ_CP024620
Coordinates   2816353..2818059 (+) Length   568 a.a.
NCBI ID   WP_005181778.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811353..2823059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS13590 (CTZ23_13650) nusA 2811973..2813457 (-) 1485 WP_005181786.1 transcription termination factor NusA -
  CTZ23_RS13595 (CTZ23_13655) rimP 2813490..2814014 (-) 525 WP_045796174.1 ribosome maturation factor RimP -
  CTZ23_RS13620 (CTZ23_13680) secG 2814929..2815258 (-) 330 WP_104989175.1 preprotein translocase subunit SecG -
  CTZ23_RS13625 (CTZ23_13685) tpiA 2815272..2816063 (-) 792 WP_104989176.1 triose-phosphate isomerase -
  CTZ23_RS13630 (CTZ23_13690) pilB 2816353..2818059 (+) 1707 WP_005181778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CTZ23_RS13635 (CTZ23_13695) pilC 2818090..2819316 (+) 1227 WP_016659656.1 type II secretion system F family protein Machinery gene
  CTZ23_RS13640 (CTZ23_13700) pilD 2819316..2820176 (+) 861 WP_005181774.1 prepilin peptidase Machinery gene
  CTZ23_RS13645 (CTZ23_13705) coaE 2820187..2820795 (+) 609 WP_104989177.1 dephospho-CoA kinase -
  CTZ23_RS13650 (CTZ23_13710) - 2820792..2821712 (-) 921 WP_045796176.1 DMT family transporter -
  CTZ23_RS13655 (CTZ23_13715) rlmB 2821730..2822482 (-) 753 WP_075167607.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CTZ23_RS13660 (CTZ23_13720) - 2822588..2822911 (-) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 63758.21 Da        Isoelectric Point: 4.9207

>NTDB_id=254447 CTZ23_RS13630 WP_005181778.1 2816353..2818059(+) (pilB) [Acinetobacter indicus strain SGAir0564]
MSVQQAMPRFTGFIRRLVEEGLVTAENMQQAIVAAKKAETDIVPYLIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLI
VREGLDEKLFTKYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNFTEDSTFDFDEDFD
LEVGDNAPETQKDDDEPQGDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRL
KVMSQMDISEKRIPQDGRIKLKLSKNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQG
MLLITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDL
ETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTE
EDLNQPEFQLYQPVGCPECREGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQ
EVNRVTSE

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=254447 CTZ23_RS13630 WP_005181778.1 2816353..2818059(+) (pilB) [Acinetobacter indicus strain SGAir0564]
ATGTCAGTACAACAAGCAATGCCTAGATTTACAGGTTTTATTCGGCGACTGGTCGAAGAAGGGCTTGTGACGGCTGAAAA
TATGCAGCAAGCCATTGTCGCGGCGAAAAAAGCCGAGACCGATATTGTGCCGTATTTAATTCAGCAGTTGCAGATTTCAC
CGCTGACCATTGCTGAAAAAATTTCCTATGAATTTGGTGAACCGATTTTTGACTTGGCGGTGTACGATTCGCGTCTGATT
GTACGTGAAGGTCTGGATGAAAAACTGTTCACCAAATACCGAATTCTGCCCATTTTCCGACGTCACAATCAGCTTTATAT
TGCTACCAGTAACCCAACCAATATCGAAGCCATTGATGCGATCCGCTTTAACAGCAAGCTGAATATTGAAGTGGTGATTG
TTGAGCATGACAAGCTGGAACGGCTGATTGAACAGAACTTTACCGAAGACAGCACCTTTGACTTTGATGAAGACTTTGAT
CTGGAAGTTGGCGACAACGCTCCCGAAACACAAAAAGATGACGATGAGCCACAAGGCGATGAAGCCCCAATCGTCAAATA
TATTAACAAGTTACTGGTCGATGCAATCCGTATGGGCGCCTCGGATTTGCACTTCGAGCCTTATGAAAAAAGCTACCGGG
TCCGTTACCGGATTGACGGCGTGTTGCGTCAAATTGCCAATCCTCCGTTACAACTGGCCACACGGCTCGCCTCACGTTTA
AAAGTTATGTCACAAATGGACATCTCGGAAAAACGTATTCCGCAGGATGGCCGGATCAAGCTCAAGCTGTCAAAAAACAA
AGCCATCGACTTCCGTGTCAACTCATTGCCGACCCTGTTCGGGGAAAAAATCGTACTACGTATTCTCGATCCATCTAGCG
CCATGCTGGGGATTGATGCACTTGGTTATGAACCGGAGCAAAAAGAGCTGTTTATGGAGGCGCTGGACAAACCACAAGGC
ATGTTACTGATTACCGGTCCGACCGGTTCCGGTAAAACCGTGTCTTTATATACCGGCTTAAATATCCTCAACCGTGAAGA
CACCAATATTTCTACCGCCGAGGATCCGGTGGAAATTAACCTGGAAGGCATCAATCAGGTCAACGTCAACCCGAAAGTGG
GGCTAACCTTTGCCGCAGCACTAAAATCATTCCTGCGTCAGGATCCGGATATTGTCATGGTCGGTGAGATCCGTGATCTG
GAAACTGCAGAAATTGCTATTAAAGCTGCACAAACCGGTCACATGGTCATGTCGACGCTGCACACCAACAGTGCACCCGA
AACCCTGACCCGTTTACGCAACATGGGCGTCCCCTCATTTAACATCGCCACCTCGGTGAACCTGGTGATTGCCCAGCGTC
TGGCACGTCGTCTCTGCCAGAAATGCAAGGCCCCGGTGGAGATTCCACGCCAGAGCCTCTTGGAGCTCGGCTTTACCGAA
GAAGATTTAAACCAGCCAGAATTCCAGCTGTATCAGCCGGTTGGCTGCCCGGAATGCCGTGAAGGCTATAAAGGCCGTGT
CGGGGTCTATGAAGTAATGAAAGTCACCCCGGAAATCTCACGCATTATTATGGAAGATGGCAATGCCTTACAGATTGCAG
CAGCCTCGGCAAAATCCGGGTTTAACAATTTACGCCGTTCAGGATTAATCAAGGTCATGCAGGGGGTCACTTCTTTACAG
GAAGTGAATCGTGTGACCAGCGAATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(190-457)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

80.351

100

0.806
  pilB Acinetobacter baylyi ADP1

78.07

100

0.783
  pilB Legionella pneumophila strain ERS1305867

50.97

99.824

0.509
  pilF Neisseria gonorrhoeae MS11

51.429

98.592

0.507
  pilB Vibrio cholerae strain A1552

49.647

99.648

0.495
  pilB Vibrio parahaemolyticus RIMD 2210633

49.551

98.063

0.486
  pilB Vibrio campbellii strain DS40M4

50.672

91.725

0.465
  pilF Thermus thermophilus HB27

37.128

100

0.373
  pilB/pilB1 Synechocystis sp. PCC 6803

33.821

100

0.366

Multiple sequence alignment