Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   DK181_RS00940 Genome accession   NZ_CP029490
Coordinates   157018..157479 (+) Length   153 a.a.
NCBI ID   WP_002959515.1    Uniprot ID   A0ABM6W352
Organism   Streptococcus sobrinus strain SL1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152018..162479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS00905 (DK182_00905) - 152935..153303 (+) 369 WP_019781971.1 DUF1033 family protein -
  DK181_RS00910 (DK182_00910) comGA/cglA 153729..154676 (+) 948 WP_002959503.1 competence type IV pilus ATPase ComGA Machinery gene
  DK181_RS00915 (DK182_00915) comGB 154600..155643 (+) 1044 WP_002959504.1 competence type IV pilus assembly protein ComGB Machinery gene
  DK181_RS00920 (DK182_00920) comGC 155640..155966 (+) 327 WP_019770073.1 competence type IV pilus major pilin ComGC Machinery gene
  DK181_RS00925 (DK182_00925) comGD 155920..156354 (+) 435 WP_254051091.1 competence type IV pilus minor pilin ComGD Machinery gene
  DK181_RS00930 (DK182_00930) comGE 156326..156619 (+) 294 WP_002959510.1 competence type IV pilus minor pilin ComGE Machinery gene
  DK181_RS00935 (DK182_00935) comGF 156603..157040 (+) 438 WP_002959513.1 competence type IV pilus minor pilin ComGF Machinery gene
  DK181_RS00940 (DK182_00940) comGG 157018..157479 (+) 462 WP_002959515.1 competence type IV pilus minor pilin ComGG Machinery gene
  DK181_RS00950 (DK182_00950) - 157681..157947 (+) 267 WP_002959516.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DK181_RS00955 (DK182_00955) - 157934..158209 (+) 276 WP_002959518.1 helix-turn-helix domain-containing protein -
  DK181_RS00960 (DK182_00960) comGH 158308..159261 (+) 954 WP_019771347.1 class I SAM-dependent methyltransferase Machinery gene
  DK181_RS00965 (DK182_00965) - 159324..160520 (+) 1197 WP_002959522.1 acetate kinase -
  DK181_RS00970 (DK182_00970) - 160998..161903 (+) 906 WP_002959524.1 LysR family transcriptional regulator -
  DK181_RS00975 (DK182_00975) - 162010..162276 (+) 267 WP_002959526.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16687.44 Da        Isoelectric Point: 8.3296

>NTDB_id=253707 DK181_RS00940 WP_002959515.1 157018..157479(+) (comGG) [Streptococcus sobrinus strain SL1]
MILQKRLRAGVLIYALLMAAIFILLLQFYLDRVVANQRQNKALEQNSQAYLIAQLVKEQANQPSGQMTFEQGQASYHKDG
KLLSVKVSLSDGASYSYDFVENESSSSSSSDKDKSKDKSKSSSSSDPSRDKSQPSSSTQSASSQSDDEKSSAG

Nucleotide


Download         Length: 462 bp        

>NTDB_id=253707 DK181_RS00940 WP_002959515.1 157018..157479(+) (comGG) [Streptococcus sobrinus strain SL1]
ATGATTTTGCAAAAACGTCTTAGGGCAGGGGTCCTCATCTATGCCCTGCTGATGGCAGCCATCTTTATTTTGCTCTTGCA
GTTCTATCTGGACCGAGTAGTGGCCAATCAGCGGCAAAATAAGGCTCTCGAGCAAAATAGTCAGGCCTATCTGATAGCCC
AGTTGGTCAAGGAGCAGGCCAATCAGCCCTCTGGCCAGATGACCTTTGAGCAAGGCCAGGCCAGCTATCACAAAGACGGC
AAACTCCTGAGTGTCAAGGTCAGCCTGTCGGATGGTGCTAGCTATAGCTATGACTTCGTTGAAAATGAGTCCTCTAGCTC
TTCCAGCTCCGACAAGGATAAAAGCAAGGACAAATCTAAATCCTCCTCATCTTCCGACCCCAGCAGGGACAAGTCCCAAC
CTTCTTCGTCAACTCAATCCGCCAGCTCGCAGTCGGATGATGAAAAGTCGAGCGCTGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

46.565

85.621

0.399
  comGG Streptococcus mutans UA159

46.565

85.621

0.399