Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CS390_RS21880 Genome accession   NZ_CP024478
Coordinates   4649954..4650463 (-) Length   169 a.a.
NCBI ID   WP_065759190.1    Uniprot ID   A0A2D2MBS2
Organism   Pseudomonas sp. HLS-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4644954..4655463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS390_RS21865 (CS390_21825) fdxH 4645555..4646505 (-) 951 WP_099775963.1 formate dehydrogenase subunit beta -
  CS390_RS21870 (CS390_21830) fdnG 4646505..4649570 (-) 3066 WP_157767163.1 formate dehydrogenase-N subunit alpha -
  CS390_RS21880 (CS390_21840) ssb 4649954..4650463 (-) 510 WP_065759190.1 single-stranded DNA-binding protein Machinery gene
  CS390_RS21885 (CS390_21845) - 4650473..4651867 (-) 1395 WP_065759191.1 MFS transporter -
  CS390_RS21890 (CS390_21850) uvrA 4651997..4654831 (+) 2835 WP_065759192.1 excinuclease ABC subunit UvrA -
  CS390_RS21895 (CS390_21855) bfr 4654890..4655354 (-) 465 WP_065759193.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18821.97 Da        Isoelectric Point: 5.9314

>NTDB_id=253704 CS390_RS21880 WP_065759190.1 4649954..4650463(-) (ssb) [Pseudomonas sp. HLS-6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQDGAPQGGGNNYNQAPRQQAPRPQQAPQRPAPQQPAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=253704 CS390_RS21880 WP_065759190.1 4649954..4650463(-) (ssb) [Pseudomonas sp. HLS-6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGTAAGGGTTCCCAGGTCTACATCGAG
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGTCGTCCACAGAACCAGGATGGTGCTCCGCAGGGTGGTGGTAACAACTACAACCAGGCCCCGC
GTCAGCAGGCGCCACGCCCACAGCAGGCACCACAGCGTCCAGCTCCGCAACAGCCAGCACCACAGCCGGCCCCGGACTTC
GACAGCTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D2MBS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.459

100

0.615
  ssb Glaesserella parasuis strain SC1401

49.206

100

0.55
  ssb Neisseria gonorrhoeae MS11

50

100

0.527
  ssb Neisseria meningitidis MC58

49.438

100

0.521

Multiple sequence alignment