Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CS390_RS17550 Genome accession   NZ_CP024478
Coordinates   3753619..3754254 (-) Length   211 a.a.
NCBI ID   WP_177442416.1    Uniprot ID   -
Organism   Pseudomonas sp. HLS-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3748619..3759254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS390_RS17520 (CS390_17500) murB 3749716..3750735 (-) 1020 WP_099775459.1 UDP-N-acetylmuramate dehydrogenase -
  CS390_RS17525 (CS390_17505) - 3750732..3751196 (-) 465 WP_099775460.1 low molecular weight protein-tyrosine-phosphatase -
  CS390_RS17530 (CS390_17510) kdsB 3751196..3751960 (-) 765 WP_099775461.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CS390_RS17535 (CS390_17515) - 3751957..3752142 (-) 186 WP_065761464.1 Trm112 family protein -
  CS390_RS17540 (CS390_17520) lpxK 3752181..3753191 (-) 1011 WP_099775462.1 tetraacyldisaccharide 4'-kinase -
  CS390_RS17545 (CS390_17525) - 3753191..3753622 (-) 432 WP_065761466.1 biopolymer transporter ExbD -
  CS390_RS17550 (CS390_17530) exbB 3753619..3754254 (-) 636 WP_177442416.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CS390_RS17555 (CS390_17535) - 3754326..3756525 (-) 2200 Protein_3459 DNA internalization-related competence protein ComEC/Rec2 -
  CS390_RS17560 (CS390_17540) - 3756667..3757206 (+) 540 WP_099775463.1 DUF2062 domain-containing protein -
  CS390_RS17565 (CS390_17545) - 3757174..3757953 (-) 780 WP_099775464.1 ABC transporter permease -
  CS390_RS17570 (CS390_17550) - 3757950..3758882 (-) 933 WP_065761470.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.01 Da        Isoelectric Point: 6.8762

>NTDB_id=253702 CS390_RS17550 WP_177442416.1 3753619..3754254(-) (exbB) [Pseudomonas sp. HLS-6]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIQDKQLNSEKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=253702 CS390_RS17550 WP_177442416.1 3753619..3754254(-) (exbB) [Pseudomonas sp. HLS-6]
GTGTGGGAATTGGTCAAGTCTGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACCTGCTGGGTCAGGTCTGGCGCTGGATTCAGGACA
AGCAACTCAATAGCGAAAAGCTCAAGGCCTTGCGCGCCGATTCACCACTGGGCGAGATCCTCGCCGCGGGCCTTGCGAAC
TCGCGGCACGGTCGCGAAATCATGAAAGAGTGCATTGAGGAAGCCGCTGCCCGGGTCATTCACGAGCTGGAGCGCTACAT
CAATGCACTGGGCACCATTGCGGCCATGGCACCACTGCTCGGCTTGCTGGGAACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACGGGCATGTCGGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCCAAGGCGTTGATCACCACGGCG
GCCGGCCTGATGGTGGGTATCCCTGCGGTCTTTTTCCACCGCTTCCTGCAGCGACGTATCGACGAACTGGTAGTGGGTAT
GGAGCAAGAAGCAATCAAGCTGGTCGAAGTGGTTCAGGGCGACCGTGATGTTGATCTGGCCGAGGGCAGGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment