Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A3411_RS06380 Genome accession   NZ_CP024228
Coordinates   1187695..1188324 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182695..1193324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS06365 helD 1182937..1184991 (-) 2055 WP_001735080.1 DNA helicase IV -
  A3411_RS06370 yccF 1185114..1185560 (+) 447 WP_001261235.1 YccF domain-containing protein -
  A3411_RS06375 yccS 1185570..1187732 (+) 2163 WP_000875061.1 YccS family putative transporter -
  A3411_RS06380 sxy/tfoX 1187695..1188324 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A3411_RS06385 sulA 1188543..1189052 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A3411_RS06395 ompA 1189409..1190449 (+) 1041 WP_000750416.1 porin OmpA -
  A3411_RS06400 matP 1190526..1190978 (-) 453 WP_004000276.1 macrodomain Ter protein MatP -
  A3411_RS06405 ycbZ 1191164..1192924 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253032 A3411_RS06380 WP_000839153.1 1187695..1188324(-) (sxy/tfoX) [Escherichia coli O25:NM strain 2014EL-1343-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253032 A3411_RS06380 WP_000839153.1 1187695..1188324(-) (sxy/tfoX) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment