Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   CQR34_RS05550 Genome accession   NZ_CP023814
Coordinates   924462..925076 (+) Length   204 a.a.
NCBI ID   WP_024465108.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 919462..930076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS05510 (CQR34_05510) - 919600..919932 (+) 333 WP_002213854.1 hypothetical protein -
  CQR34_RS05515 (CQR34_05515) - 920263..920772 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CQR34_RS05530 (CQR34_05530) - 921300..921887 (-) 588 WP_002220670.1 superoxide dismutase -
  CQR34_RS05540 (CQR34_05540) dnaB 922049..923455 (+) 1407 WP_002213843.1 replicative DNA helicase -
  CQR34_RS05545 (CQR34_05545) pilH 923764..924432 (+) 669 WP_024465109.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CQR34_RS05550 (CQR34_05550) pilV 924462..925076 (+) 615 WP_024465108.1 type IV pilus modification protein PilV Machinery gene
  CQR34_RS05555 (CQR34_05555) pilJ 925073..926011 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  CQR34_RS05560 (CQR34_05560) pilK 925990..926586 (+) 597 WP_024465107.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CQR34_RS05565 (CQR34_05565) pilX 926591..927064 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  CQR34_RS05580 (CQR34_05580) - 928812..929240 (-) 429 Protein_941 AzlC family ABC transporter permease -
  CQR34_RS05585 (CQR34_05585) dut 929383..929835 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22039.01 Da        Isoelectric Point: 4.9610

>NTDB_id=250241 CQR34_RS05550 WP_024465108.1 924462..925076(+) (pilV) [Neisseria meningitidis strain M26417]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREVETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHHTLSAVDGDFAVDAVKSKKDLAKAQLDRFGYELKNALPDAAAIYYAICKDSLGVAPTLSAGSTFSSNCDASA
NGDTLIKVLWVNDSAGDSDIAHTNLETNGNNIVYTYQARVGGRE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=250241 CQR34_RS05550 WP_024465108.1 924462..925076(+) (pilV) [Neisseria meningitidis strain M26417]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCTGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTTCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGTAGAGACGCAAACCA
TCGTCAGTCAAATCACGCAAAACCTGATGGAGGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATCATACACTATCAGCTGTGGATGGCGATTTTGCGGTTGATGCCGTGAAAAGCAAGAA
GGATTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGCAGCCATCTATTACG
CCATCTGCAAGGATTCGTTGGGTGTTGCGCCGACATTGTCCGCCGGTAGTACTTTTTCTTCAAATTGCGATGCTAGTGCA
AATGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCATACGAATCTTGAGAC
GAACGGCAACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.44

100

0.887
  pilI Neisseria gonorrhoeae MS11

83.824

100

0.838
  pilV Neisseria gonorrhoeae MS11

83.824

100

0.838

Multiple sequence alignment