Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CQR34_RS05560 Genome accession   NZ_CP023814
Coordinates   925990..926586 (+) Length   198 a.a.
NCBI ID   WP_024465107.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 920990..931586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS05530 (CQR34_05530) - 921300..921887 (-) 588 WP_002220670.1 superoxide dismutase -
  CQR34_RS05540 (CQR34_05540) dnaB 922049..923455 (+) 1407 WP_002213843.1 replicative DNA helicase -
  CQR34_RS05545 (CQR34_05545) pilH 923764..924432 (+) 669 WP_024465109.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CQR34_RS05550 (CQR34_05550) pilV 924462..925076 (+) 615 WP_024465108.1 type IV pilus modification protein PilV Machinery gene
  CQR34_RS05555 (CQR34_05555) pilJ 925073..926011 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  CQR34_RS05560 (CQR34_05560) pilK 925990..926586 (+) 597 WP_024465107.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CQR34_RS05565 (CQR34_05565) pilX 926591..927064 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  CQR34_RS05580 (CQR34_05580) - 928812..929240 (-) 429 Protein_941 AzlC family ABC transporter permease -
  CQR34_RS05585 (CQR34_05585) dut 929383..929835 (+) 453 WP_002220679.1 dUTP diphosphatase -
  CQR34_RS05590 (CQR34_05590) dapC 929911..931098 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  CQR34_RS15130 - 931186..931311 (+) 126 Protein_944 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21714.66 Da        Isoelectric Point: 7.5813

>NTDB_id=250243 CQR34_RS05560 WP_024465107.1 925990..926586(+) (pilK) [Neisseria meningitidis strain M26417]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=250243 CQR34_RS05560 WP_024465107.1 925990..926586(+) (pilK) [Neisseria meningitidis strain M26417]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.614

100

0.904

Multiple sequence alignment