Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CQR34_RS05545 Genome accession   NZ_CP023814
Coordinates   923764..924432 (+) Length   222 a.a.
NCBI ID   WP_024465109.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 918764..929432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS15125 - 919448..919555 (+) 108 Protein_931 IS5/IS1182 family transposase -
  CQR34_RS05510 (CQR34_05510) - 919600..919932 (+) 333 WP_002213854.1 hypothetical protein -
  CQR34_RS05515 (CQR34_05515) - 920263..920772 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CQR34_RS05530 (CQR34_05530) - 921300..921887 (-) 588 WP_002220670.1 superoxide dismutase -
  CQR34_RS05540 (CQR34_05540) dnaB 922049..923455 (+) 1407 WP_002213843.1 replicative DNA helicase -
  CQR34_RS05545 (CQR34_05545) pilH 923764..924432 (+) 669 WP_024465109.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CQR34_RS05550 (CQR34_05550) pilV 924462..925076 (+) 615 WP_024465108.1 type IV pilus modification protein PilV Machinery gene
  CQR34_RS05555 (CQR34_05555) pilJ 925073..926011 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  CQR34_RS05560 (CQR34_05560) pilK 925990..926586 (+) 597 WP_024465107.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CQR34_RS05565 (CQR34_05565) pilX 926591..927064 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  CQR34_RS05580 (CQR34_05580) - 928812..929240 (-) 429 Protein_941 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24811.35 Da        Isoelectric Point: 9.5822

>NTDB_id=250240 CQR34_RS05545 WP_024465109.1 923764..924432(+) (pilH) [Neisseria meningitidis strain M26417]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQLTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=250240 CQR34_RS05545 WP_024465109.1 923764..924432(+) (pilH) [Neisseria meningitidis strain M26417]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCTGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.615

99.55

0.842

Multiple sequence alignment