Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GMET_RS01805 | Genome accession | NC_007517 |
| Coordinates | 406141..406584 (-) | Length | 147 a.a. |
| NCBI ID | WP_004512334.1 | Uniprot ID | Q39YR9 |
| Organism | Geobacter metallireducens GS-15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 401141..411584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GMET_RS01780 (Gmet_0357) | - | 402078..402737 (+) | 660 | WP_004512329.1 | DUF1318 domain-containing protein | - |
| GMET_RS01785 (Gmet_0358) | - | 402798..404156 (-) | 1359 | WP_011365660.1 | MATE family efflux transporter | - |
| GMET_RS01790 (Gmet_0359) | - | 404402..404866 (+) | 465 | WP_004512331.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| GMET_RS01795 (Gmet_0360) | - | 404934..405266 (+) | 333 | WP_004512332.1 | DUF1904 domain-containing protein | - |
| GMET_RS01800 (Gmet_0361) | - | 405318..406052 (+) | 735 | WP_004512333.1 | SDR family oxidoreductase | - |
| GMET_RS01805 (Gmet_0362) | ssb | 406141..406584 (-) | 444 | WP_004512334.1 | single-stranded DNA-binding protein | Machinery gene |
| GMET_RS01810 (Gmet_0363) | - | 406727..407431 (+) | 705 | WP_004512335.1 | lysophospholipid acyltransferase family protein | - |
| GMET_RS01815 (Gmet_0364) | - | 407433..407612 (+) | 180 | WP_004512336.1 | hypothetical protein | - |
| GMET_RS01820 (Gmet_0365) | - | 407619..408035 (+) | 417 | WP_004512337.1 | tetratricopeptide repeat protein | - |
| GMET_RS01825 (Gmet_0366) | - | 408042..409718 (+) | 1677 | WP_004512338.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16027.79 Da Isoelectric Point: 5.3430
>NTDB_id=24949 GMET_RS01805 WP_004512334.1 406141..406584(-) (ssb) [Geobacter metallireducens GS-15]
MASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF
MASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF
Nucleotide
Download Length: 444 bp
>NTDB_id=24949 GMET_RS01805 WP_004512334.1 406141..406584(-) (ssb) [Geobacter metallireducens GS-15]
ATGGCAAGTCTCAACAAGGTAATGCTCATCGGCAATCTCGGCAAGGACCCCGAAGTCCGCTACACCCCGGGCGGTACGGC
GGTGGCCAGCTTCTCCCTCGCCACCAGCGAGAAGTTCAAGAACAGGAACGGCGAGTTCGAGGAGAAGACCGAGTGGCACA
ACGTGGTCCTCTGGGGGCGCCAGGCGGAGATCGCCGGCGAGTACCTGGCAAAGGGGCGGACCGTCTTCATCGAGGGGCGG
CTCCAGACCCGCAAGTGGCAGGACAAGGAAGGCCGCGACCGCTGGTCCACCGAGGTGGTGGGGGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAAGGGGGCGGCGGGCGCTCCGGCGGACGCGGCGGCCAGGAAGGCGGCTTCGGCGGCGGCCCGGCCT
ACGACGAACCTGCCTTCAACCCGGATGACGATATTCCGTTTTAA
ATGGCAAGTCTCAACAAGGTAATGCTCATCGGCAATCTCGGCAAGGACCCCGAAGTCCGCTACACCCCGGGCGGTACGGC
GGTGGCCAGCTTCTCCCTCGCCACCAGCGAGAAGTTCAAGAACAGGAACGGCGAGTTCGAGGAGAAGACCGAGTGGCACA
ACGTGGTCCTCTGGGGGCGCCAGGCGGAGATCGCCGGCGAGTACCTGGCAAAGGGGCGGACCGTCTTCATCGAGGGGCGG
CTCCAGACCCGCAAGTGGCAGGACAAGGAAGGCCGCGACCGCTGGTCCACCGAGGTGGTGGGGGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAAGGGGGCGGCGGGCGCTCCGGCGGACGCGGCGGCCAGGAAGGCGGCTTCGGCGGCGGCCCGGCCT
ACGACGAACCTGCCTTCAACCCGGATGACGATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.282 |
100 |
0.605 |
| ssb | Glaesserella parasuis strain SC1401 |
43.889 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
50 |
100 |
0.503 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.994 |
100 |
0.435 |
| ssb | Neisseria gonorrhoeae MS11 |
56.14 |
77.551 |
0.435 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
32.164 |
100 |
0.374 |