Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NOC_RS00860 Genome accession   NC_007484
Coordinates   142062..142418 (-) Length   118 a.a.
NCBI ID   WP_002812134.1    Uniprot ID   -
Organism   Nitrosococcus oceani ATCC 19707     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 137062..147418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOC_RS00840 (Noc_0127) - 138503..139351 (-) 849 WP_002813244.1 CheR family methyltransferase -
  NOC_RS00845 (Noc_0128) - 139364..140977 (-) 1614 WP_011330238.1 methyl-accepting chemotaxis protein -
  NOC_RS00850 (Noc_0129) - 141069..141605 (-) 537 WP_002812178.1 chemotaxis protein CheW -
  NOC_RS00855 (Noc_0130) - 141617..141982 (-) 366 WP_011330239.1 response regulator -
  NOC_RS00860 (Noc_0131) pilG 142062..142418 (-) 357 WP_002812134.1 response regulator Regulator
  NOC_RS00865 (Noc_0132) - 143466..144590 (+) 1125 WP_244859997.1 hypothetical protein -
  NOC_RS00870 (Noc_0133) - 144630..145175 (+) 546 WP_002813338.1 GTP-binding protein -
  NOC_RS00875 (Noc_0134) - 145168..145797 (+) 630 WP_002812156.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13216.36 Da        Isoelectric Point: 8.5112

>NTDB_id=24804 NOC_RS00860 WP_002812134.1 142062..142418(-) (pilG) [Nitrosococcus oceani ATCC 19707]
MVIDDSKTIRRTAETLLKKSGCKVVTAEDGFEALPKINQHHPDIIFIDIMMPRLDGYQTCALIKNNTALKKTPIIMLSSK
DGLFDRARGRIAGCDQYLTKPFTREELLGAISNHCNHS

Nucleotide


Download         Length: 357 bp        

>NTDB_id=24804 NOC_RS00860 WP_002812134.1 142062..142418(-) (pilG) [Nitrosococcus oceani ATCC 19707]
ATGGTCATTGACGATAGTAAGACTATTCGAAGAACGGCAGAAACTTTACTTAAAAAATCTGGCTGTAAAGTAGTAACAGC
AGAAGATGGATTCGAGGCTCTTCCCAAAATAAACCAGCATCATCCAGACATCATATTTATAGATATTATGATGCCAAGGC
TAGATGGGTATCAAACCTGTGCCTTGATAAAGAACAACACCGCATTAAAAAAAACTCCAATTATTATGCTCTCTAGCAAG
GATGGTTTATTTGACCGGGCACGTGGCCGCATCGCCGGTTGCGACCAATATCTAACAAAGCCTTTTACTCGTGAAGAACT
CTTAGGTGCTATTTCAAACCACTGCAATCACTCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.69

98.305

0.695
  vicR Streptococcus mutans UA159

39.831

100

0.398
  pilH Synechocystis sp. PCC 6803

42.342

94.068

0.398
  chpA Acinetobacter baumannii strain A118

40.541

94.068

0.381
  chiS Vibrio cholerae strain A1552

37.288

100

0.373
  micA Streptococcus pneumoniae Cp1015

37.288

100

0.373

Multiple sequence alignment