Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   CO687_RS09795 Genome accession   NZ_CP023511
Coordinates   1988813..1989514 (-) Length   233 a.a.
NCBI ID   WP_008809004.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983813..1994514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS09775 (CO687_09775) rnc 1985331..1986029 (-) 699 WP_045502139.1 ribonuclease III -
  CO687_RS09780 (CO687_09780) - 1986269..1986628 (-) 360 WP_048778539.1 YbaN family protein -
  CO687_RS09785 (CO687_09785) vicX 1986663..1987466 (-) 804 WP_096755358.1 MBL fold metallo-hydrolase Regulator
  CO687_RS09790 (CO687_09790) micB 1987459..1988820 (-) 1362 WP_008809003.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CO687_RS09795 (CO687_09795) micA 1988813..1989514 (-) 702 WP_008809004.1 response regulator YycF Regulator
  CO687_RS09800 (CO687_09800) thrS 1989720..1991663 (-) 1944 WP_012000240.1 threonine--tRNA ligase -
  CO687_RS10665 (CO687_09805) - 1991755..1992126 (-) 372 WP_045773786.1 hypothetical protein -
  CO687_RS09815 (CO687_09815) - 1992861..1994174 (-) 1314 WP_048778536.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26790.54 Da        Isoelectric Point: 4.6297

>NTDB_id=247993 CO687_RS09795 WP_008809004.1 1988813..1989514(-) (micA) [Streptococcus gordonii strain FDAARGOS_371]
MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLEVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEFAVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTH
REFELLYHLASHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=247993 CO687_RS09795 WP_008809004.1 1988813..1989514(-) (micA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAGAAAATATTAGTTGTAGATGACGAAAAACCAATTTCAGATATTATAAAATTTAATATGGTAAAAGAGGGCTATGA
AGTTGTTACGGCTTTTGATGGCCGTGAAGCTCTTGAGATGTTTGAAGCAGAAAATCCTGATATTTTGATTTTGGATTTGA
TGTTACCAGAGTTGGACGGGCTAGAAGTAGCACGCACCATTCGGAAGACCAGTAACGTTCCAATTATTGTCCTATCGGCT
AAAGATAGTGAGTTTGATAAAGTTATCGGCCTCGAGATCGGAGCAGATGACTATGTGACCAAGCCTTTCTCTAATCGTGA
GCTCCAAGCTCGTGTCAAGGCTATTTTGCGACGTTCAGAATTTGCTGTAGATACCCAAGAAAGTGAAAAGGGTTCAAATG
AGTTGACAGTGGGCGAATTGCAAATTTTACCAGATGCTTTTGTTGCTAAGAAACATGGCGAGGAACTAGAACTAACCCAT
CGTGAGTTTGAATTACTCTACCATTTGGCTAGTCATGTTGGTCAAGTAATGACACGCGAACACCTACTAGAGACAGTTTG
GGGTTATGATTATTTTGGTGATGTACGTACTGTTGATGTGACGATTCGCCGTTTACGTGAAAAGATTGAAGATACGCCAA
GCCGACCAGAGTATATTTTAACTCGTCGTGGCGTTGGCTACTATATGAGAAACAATGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.12

100

0.841
  vicR Streptococcus mutans UA159

79.574

100

0.803
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.541

98.283

0.438
  covR Streptococcus salivarius strain HSISS4

44.105

98.283

0.433
  scnR Streptococcus mutans UA159

37.5

99.571

0.373

Multiple sequence alignment