Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   CO687_RS07685 Genome accession   NZ_CP023511
Coordinates   1555283..1556125 (+) Length   280 a.a.
NCBI ID   WP_061595871.1    Uniprot ID   A0AB35FUR7
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1550283..1561125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS07655 (CO687_07655) - 1550799..1551398 (+) 600 WP_060971010.1 hypothetical protein -
  CO687_RS07660 (CO687_07660) - 1551689..1552027 (+) 339 WP_008808609.1 ATP cone domain-containing protein -
  CO687_RS07665 (CO687_07665) ylqF 1552142..1552993 (+) 852 WP_082307626.1 ribosome biogenesis GTPase YlqF -
  CO687_RS07670 (CO687_07670) - 1552980..1553744 (+) 765 WP_082307627.1 ribonuclease HII -
  CO687_RS07675 (CO687_07675) - 1553762..1554580 (+) 819 WP_082307628.1 PRD domain-containing protein -
  CO687_RS07680 (CO687_07680) - 1554577..1555155 (+) 579 WP_096755219.1 sugar O-acetyltransferase -
  CO687_RS07685 (CO687_07685) dprA/cilB/dalA 1555283..1556125 (+) 843 WP_061595871.1 DNA-processing protein DprA Machinery gene
  CO687_RS07690 (CO687_07690) topA 1556209..1558302 (+) 2094 WP_096755220.1 type I DNA topoisomerase -
  CO687_RS07695 (CO687_07695) - 1558413..1559096 (+) 684 WP_060971042.1 SatD family protein -
  CO687_RS07700 (CO687_07700) - 1559080..1559787 (+) 708 WP_060971043.1 DUF3307 domain-containing protein -
  CO687_RS07705 (CO687_07705) - 1559806..1560300 (+) 495 WP_096755221.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31154.77 Da        Isoelectric Point: 6.2437

>NTDB_id=247987 CO687_RS07685 WP_061595871.1 1555283..1556125(+) (dprA/cilB/dalA) [Streptococcus gordonii strain FDAARGOS_371]
MKNYDIYKLKHAGLTNGQVLNVLRYAENKEKELSLRDIAVVSECRNPALFIERYKQIDDDFLKKSFEEFPSFSILDDIYP
WDLSEIYNPPALLFYQGNIDLLELPKVAVVGSRDSSKLGNQSVQKIIKELNNELIIVSGLARGIDTAAHMAALQNGGRTI
AVIGTGLDVFYPKANKKLQSYIGKNHLVLSEYGPGEQPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGKSDGCHHLIQEGAKCIMSGSDVLSEFDF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=247987 CO687_RS07685 WP_061595871.1 1555283..1556125(+) (dprA/cilB/dalA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAAAACTATGATATTTATAAATTGAAACATGCTGGACTGACTAATGGACAAGTTCTTAATGTCTTGAGATATGCTGA
AAACAAGGAAAAGGAGCTTTCTTTGCGTGATATTGCGGTGGTTTCAGAGTGCCGTAATCCCGCCCTGTTTATAGAACGCT
ATAAGCAAATTGACGACGATTTCTTAAAAAAATCCTTTGAGGAATTTCCCTCTTTTTCTATCTTGGATGATATTTATCCA
TGGGATTTGAGTGAGATATATAACCCACCTGCTCTTTTGTTTTATCAGGGAAATATTGATCTGCTTGAATTGCCAAAAGT
AGCAGTAGTCGGAAGTCGTGATAGTAGTAAGCTTGGAAATCAGTCCGTTCAAAAAATTATTAAAGAACTGAATAATGAAT
TAATCATTGTGAGCGGGTTAGCGCGTGGGATTGATACGGCTGCTCATATGGCAGCTTTACAGAATGGCGGAAGGACTATA
GCTGTTATTGGAACTGGATTAGATGTTTTTTATCCTAAAGCCAATAAAAAACTTCAGTCCTATATTGGCAAAAATCATCT
GGTTTTATCAGAATACGGTCCCGGTGAACAGCCTTTGAAGTTTCATTTTCCTGAGCGAAATCGAATTATTGCAGGTTTGT
GCAGGGGCGTCATTGTTGCTGAAGCTAAGATGAGATCTGGAAGCTTGATAACTTGTGAGCGAGCGATGGAAGAAGGAAGA
GATGTATTTGCTATTCCTGGATCAATTCTAGATGGAAAATCTGATGGCTGCCATCATTTGATTCAAGAAGGCGCTAAGTG
CATTATGTCAGGCTCTGATGTTCTATCTGAGTTTGATTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

78.929

100

0.789
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

78.571

100

0.786
  dprA/cilB/dalA Streptococcus pneumoniae D39

78.571

100

0.786
  dprA/cilB/dalA Streptococcus pneumoniae R6

78.571

100

0.786
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

78.571

100

0.786
  dprA/cilB/dalA Streptococcus mitis SK321

78.214

100

0.782
  dprA Streptococcus mutans UA159

66.071

100

0.661
  dprA Lactococcus lactis subsp. cremoris KW2

58.273

99.286

0.579
  dprA Legionella pneumophila strain ERS1305867

43.096

85.357

0.368

Multiple sequence alignment