Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   CO686_RS08980 Genome accession   NZ_CP023507
Coordinates   1832736..1833398 (-) Length   220 a.a.
NCBI ID   WP_000995722.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827736..1838398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS08960 (CO686_08960) - 1828529..1829707 (-) 1179 WP_000656060.1 acetyl-CoA C-acetyltransferase -
  CO686_RS08965 (CO686_08965) - 1829726..1830574 (-) 849 WP_049501305.1 3-hydroxybutyryl-CoA dehydrogenase -
  CO686_RS08970 (CO686_08970) - 1830655..1831863 (-) 1209 WP_000201480.1 acyl-CoA dehydrogenase family protein -
  CO686_RS08975 (CO686_08975) raiA 1832108..1832656 (-) 549 WP_000599114.1 ribosome-associated translation inhibitor RaiA -
  CO686_RS08980 (CO686_08980) comFC/cflB 1832736..1833398 (-) 663 WP_000995722.1 ComF family protein Machinery gene
  CO686_RS08985 (CO686_08985) comFA/cflA 1833395..1834693 (-) 1299 WP_002880469.1 DEAD/DEAH box helicase Machinery gene
  CO686_RS08990 (CO686_08990) - 1834750..1835385 (+) 636 WP_000395750.1 YigZ family protein -
  CO686_RS08995 (CO686_08995) - 1835401..1835844 (+) 444 WP_000863902.1 PH domain-containing protein -
  CO686_RS09000 (CO686_09000) cysK 1835941..1836867 (+) 927 WP_000158482.1 cysteine synthase A -
  CO686_RS09005 (CO686_09005) tsf 1836971..1838011 (-) 1041 WP_000808059.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24955.97 Da        Isoelectric Point: 8.1493

>NTDB_id=247887 CO686_RS08980 WP_000995722.1 1832736..1833398(-) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_367]
MNCLLCGQTTKSELTFSSLFLLKDDCSYLCSACASSFERIGENYCPNCMKTGMSTKCQDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYRGYQFVLIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=247887 CO686_RS08980 WP_000995722.1 1832736..1833398(-) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_367]
ATGAACTGTTTATTATGTGGCCAGACTACAAAGAGTGAGCTGACTTTTAGCAGTCTCTTCCTTTTGAAGGATGATTGCAG
TTATCTTTGCTCAGCTTGTGCTTCTAGTTTTGAGAGGATTGGTGAGAATTATTGCCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGATATAAGTTTGATGGCGATTTTTTGCTTAGAAAGGTTTTTGCTTCTGTTCTTGCTGA
GGAGCTGAAAAAGTATAGAGGATATCAATTTGTGTTGATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAAGGTTTGGTTGAGGCAGCAGGCTTTTCTTTCAAAGATATATTAGGAAAAAGAGAAGAGAGTGCTAGTTCTTCT
AAAAGCCGTTTAGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCCAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

79.545

100

0.795
  comFC/cflB Streptococcus mitis SK321

78.636

100

0.786
  comFC/cflB Streptococcus pneumoniae D39

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae R6

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae Rx1

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae TIGR4

78.182

100

0.782
  comFC Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.377

Multiple sequence alignment