Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CCZ27_RS17425 Genome accession   NZ_CP023439
Coordinates   3978513..3980012 (-) Length   499 a.a.
NCBI ID   WP_096450303.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3963564..3978500 3978513..3980012 flank 13


Gene organization within MGE regions


Location: 3963564..3980012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS23665 - 3964710..3965225 (-) 516 WP_157748624.1 hypothetical protein -
  CCZ27_RS23670 - 3965313..3965942 (-) 630 WP_157748625.1 hypothetical protein -
  CCZ27_RS17375 (CCZ27_17375) - 3965901..3966914 (+) 1014 WP_096450283.1 integron integrase -
  CCZ27_RS17380 (CCZ27_17380) metH 3966948..3970652 (-) 3705 WP_096450285.1 methionine synthase -
  CCZ27_RS17385 (CCZ27_17385) - 3971050..3971661 (-) 612 WP_096450287.1 hypothetical protein -
  CCZ27_RS17390 (CCZ27_17390) bamE 3971676..3972167 (-) 492 WP_096450289.1 outer membrane protein assembly factor BamE -
  CCZ27_RS17395 (CCZ27_17395) - 3972335..3973453 (+) 1119 WP_096450291.1 branched-chain amino acid ABC transporter substrate-binding protein -
  CCZ27_RS17400 (CCZ27_17400) - 3973699..3974814 (+) 1116 WP_096450293.1 branched-chain amino acid ABC transporter substrate-binding protein -
  CCZ27_RS17405 (CCZ27_17405) - 3974949..3975881 (+) 933 WP_096450295.1 branched-chain amino acid ABC transporter permease -
  CCZ27_RS17410 (CCZ27_17410) - 3975897..3977006 (+) 1110 WP_096450297.1 ABC transporter ATP-binding protein -
  CCZ27_RS17415 (CCZ27_17415) - 3977003..3977776 (+) 774 WP_096450299.1 ABC transporter ATP-binding protein -
  CCZ27_RS17420 (CCZ27_17420) - 3977766..3978500 (+) 735 WP_096450301.1 ABC transporter ATP-binding protein -
  CCZ27_RS17425 (CCZ27_17425) comM 3978513..3980012 (-) 1500 WP_096450303.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52498.02 Da        Isoelectric Point: 7.7463

>NTDB_id=247170 CCZ27_RS17425 WP_096450303.1 3978513..3980012(-) (comM) [Thauera sp. K11]
MSLALVRTRALDGLDAPEVTVEVHLANGLPAFNLVGLPDTEVREARDRVRAAILTSQFEFPQRRITVNLAPADLPKEGGR
FDLPIAVGILAASGQVSGELLDSLEFCGELSLTGGLRAVRGVLAAALAAARAGRGLVLAADNGGEAALAREARVLPATSL
LAVCAHLNGHEALVRHSVAAPAGEAAAAPDLADVRGQLQARRALEVAAAGGHSLLMFGPPGTGKSMLAQRLPGLLPPMDE
AEALESAAVFSLEGGFEPSAWGRRPFRAPHHSASAAALVGGGALPRPGEISLANHGVLFLDELPEFDRRVLESLREPLES
GVVTVSRARRRAEFPARFQLVAAMNPCPCGYAGHPARACNCTPDQVARYRRRLSGPLLDRIDLTVEVPALAHEDLAAAPA
GESSATVRARVSQARALQHERQGGPNARLEPGRVEEICAPDAAGAALLKQAMSRLNLSARAYHRVLRVARTLADLAGAER
PNMVHVAEAIQYRRSLDGR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=247170 CCZ27_RS17425 WP_096450303.1 3978513..3980012(-) (comM) [Thauera sp. K11]
ATGTCACTTGCGCTGGTCCGCACCCGCGCGCTCGACGGCCTGGATGCGCCCGAGGTCACCGTCGAGGTCCATCTCGCCAA
TGGCCTGCCGGCGTTCAATCTGGTCGGCCTGCCCGACACCGAGGTGCGCGAGGCGCGCGACCGGGTGCGGGCCGCCATCC
TGACCTCGCAGTTCGAGTTCCCGCAGCGCCGCATCACCGTCAACCTCGCGCCGGCCGACCTGCCCAAGGAGGGCGGGCGC
TTCGACCTGCCGATCGCCGTCGGCATTCTCGCCGCGTCGGGCCAGGTGAGCGGCGAACTGCTCGATTCGCTCGAGTTCTG
CGGCGAACTGTCGCTGACCGGCGGCCTGCGCGCGGTGCGCGGCGTGCTGGCGGCGGCGCTCGCCGCGGCACGGGCCGGGC
GCGGCCTCGTCCTCGCCGCCGACAACGGCGGCGAAGCGGCGCTCGCGCGCGAGGCGAGGGTGCTGCCCGCCACCAGCCTG
CTCGCGGTATGCGCCCACCTGAACGGGCATGAGGCGCTGGTCCGCCACAGCGTGGCCGCGCCGGCCGGCGAAGCGGCCGC
GGCGCCGGATCTGGCCGACGTGCGCGGCCAGTTGCAGGCGCGGCGCGCGCTCGAAGTGGCGGCAGCCGGCGGGCACTCGC
TGCTGATGTTCGGCCCGCCCGGAACCGGCAAGTCCATGCTCGCCCAGCGCCTGCCCGGACTGCTGCCGCCGATGGACGAG
GCCGAGGCGCTCGAGAGTGCGGCGGTGTTCTCGCTCGAAGGCGGCTTCGAGCCGTCGGCCTGGGGCAGGCGGCCCTTCCG
GGCGCCGCATCACTCCGCCTCGGCCGCCGCGCTGGTGGGCGGCGGCGCGTTGCCGCGGCCCGGCGAGATCTCGCTGGCCA
ACCACGGCGTGCTGTTTCTCGACGAACTGCCGGAGTTCGACCGCCGCGTGCTCGAGTCGCTGCGCGAGCCGCTGGAATCG
GGCGTCGTCACCGTGTCGCGCGCGCGCCGGCGGGCCGAGTTTCCGGCGCGCTTCCAACTGGTTGCGGCGATGAATCCCTG
CCCCTGCGGCTATGCCGGACATCCGGCGCGCGCCTGCAACTGCACGCCGGACCAGGTGGCGCGCTACCGTCGCCGGCTGT
CGGGCCCGCTGCTGGACCGCATCGACCTCACCGTGGAAGTGCCGGCGCTCGCGCACGAGGACCTCGCCGCCGCGCCGGCG
GGCGAATCGTCGGCGACGGTGCGTGCCCGCGTGTCGCAGGCGCGCGCCCTGCAGCACGAGCGCCAGGGCGGTCCCAACGC
CAGGCTGGAACCCGGGCGGGTGGAGGAAATCTGCGCGCCGGATGCCGCGGGTGCCGCGCTGCTCAAACAGGCGATGAGCC
GGCTGAACCTGTCGGCGCGCGCCTACCATCGCGTGCTGCGTGTGGCGCGCACGCTCGCCGATCTCGCCGGCGCGGAACGC
CCCAACATGGTGCATGTGGCCGAGGCGATCCAGTACCGCCGCAGCCTGGACGGGCGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.847

99.399

0.555
  comM Vibrio campbellii strain DS40M4

54.839

99.399

0.545
  comM Haemophilus influenzae Rd KW20

53.984

100

0.543
  comM Glaesserella parasuis strain SC1401

51.2

100

0.513
  comM Legionella pneumophila str. Paris

48.697

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.697

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.97

100

0.457

Multiple sequence alignment