Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   SSP_RS06175 Genome accession   NC_007350
Coordinates   1257022..1257333 (+) Length   103 a.a.
NCBI ID   WP_011303023.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1252022..1262333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSP_RS06145 - 1252760..1252957 (+) 198 WP_041080619.1 YqgQ family protein -
  SSP_RS06150 (SSP1209) - 1252961..1253947 (+) 987 WP_011303019.1 glucokinase -
  SSP_RS06155 (SSP1210) - 1253947..1254273 (+) 327 WP_002483185.1 MTH1187 family thiamine-binding protein -
  SSP_RS06160 (SSP1211) - 1254273..1254896 (+) 624 WP_011303020.1 MBL fold metallo-hydrolase -
  SSP_RS06165 (SSP1212) comGA 1254984..1255958 (+) 975 WP_011303021.1 competence type IV pilus ATPase ComGA Machinery gene
  SSP_RS06170 (SSP1213) comGB 1255930..1256994 (+) 1065 WP_011303022.1 competence type IV pilus assembly protein ComGB -
  SSP_RS06175 (SSP1214) comGC 1257022..1257333 (+) 312 WP_011303023.1 competence type IV pilus major pilin ComGC Machinery gene
  SSP_RS06180 (SSP1215) comGD 1257311..1257769 (+) 459 WP_169932327.1 competence type IV pilus minor pilin ComGD -
  SSP_RS06190 (SSP1216) comGF 1258027..1258470 (+) 444 WP_011303025.1 competence type IV pilus minor pilin ComGF -
  SSP_RS06200 (SSP1217) - 1258674..1259147 (+) 474 WP_002483192.1 shikimate kinase -
  SSP_RS06205 (SSP1218) gcvT 1259331..1260422 (+) 1092 WP_011303027.1 glycine cleavage system aminomethyltransferase GcvT -
  SSP_RS06210 (SSP1219) gcvPA 1260440..1261792 (+) 1353 WP_011303028.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11372.45 Da        Isoelectric Point: 9.1187

>NTDB_id=24606 SSP_RS06175 WP_011303023.1 1257022..1257333(+) (comGC) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
MKKLKINRNAFTLIEMLLVLLIISLLLILIIPNIAKQSSHLQNTGCEAQLKMIDSQIEAYALKFNKKPSSIEDLVTEGYI
KENQKSCKSGAAITINNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=24606 SSP_RS06175 WP_011303023.1 1257022..1257333(+) (comGC) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
ATGAAAAAACTAAAAATTAATAGAAATGCTTTTACATTAATAGAAATGTTACTTGTATTATTAATAATTAGCTTATTATT
AATATTAATTATACCCAATATAGCTAAACAATCGTCTCATTTGCAAAATACTGGATGTGAGGCACAACTTAAAATGATTG
ATAGCCAAATTGAAGCGTATGCTTTAAAGTTTAATAAAAAGCCATCGTCTATAGAAGACTTAGTTACAGAAGGATACATT
AAAGAAAATCAAAAGTCATGTAAATCTGGTGCAGCCATCACTATTAACAATGGTGAAGCTGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

78.723

91.262

0.718
  comGC Staphylococcus aureus MW2

78.723

91.262

0.718
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

100

0.437
  comYC Streptococcus mutans UA159

48.837

83.495

0.408
  comYC Streptococcus mutans UA140

48.837

83.495

0.408
  comGC/cglC Streptococcus mitis NCTC 12261

39.806

100

0.398
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

91.262

0.379
  comYC Streptococcus suis isolate S10

44.706

82.524

0.369
  comGC/cglC Streptococcus mitis SK321

45.238

81.553

0.369

Multiple sequence alignment