Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CLM98_RS21485 Genome accession   NZ_CP023285
Coordinates   4735223..4736749 (+) Length   508 a.a.
NCBI ID   WP_104948392.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain 03-1638-1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4730223..4741749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM98_RS21460 (CLM98_21340) - 4731068..4731724 (+) 657 WP_015463693.1 RIO1 family regulatory kinase/ATPase -
  CLM98_RS21465 (CLM98_21345) - 4731928..4733913 (-) 1986 WP_011052611.1 beta-N-acetylglucosaminidase domain-containing protein -
  CLM98_RS21475 (CLM98_21355) - 4734397..4734771 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  CLM98_RS21480 (CLM98_21360) - 4734926..4735207 (+) 282 WP_003486493.1 accessory factor UbiK family protein -
  CLM98_RS21485 (CLM98_21365) comM 4735223..4736749 (+) 1527 WP_104948392.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CLM98_RS21490 (CLM98_21370) - 4737098..4737607 (+) 510 WP_015471471.1 lipocalin family protein -
  CLM98_RS21495 (CLM98_21375) - 4737847..4738023 (-) 177 WP_003486502.1 hypothetical protein -
  CLM98_RS21500 (CLM98_21380) - 4738406..4739968 (+) 1563 WP_011052635.1 EAL domain-containing protein -
  CLM98_RS21505 (CLM98_21385) - 4740034..4741155 (-) 1122 WP_011052636.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54054.78 Da        Isoelectric Point: 8.5235

>NTDB_id=245753 CLM98_RS21485 WP_104948392.1 4735223..4736749(+) (comM) [Xanthomonas citri pv. citri strain 03-1638-1-1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCTSGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRS
GNLGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHNDQVLLERAIEQLQLSARSMHRILRVARTIADLDD
SADIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=245753 CLM98_RS21485 WP_104948392.1 4735223..4736749(+) (comM) [Xanthomonas citri pv. citri strain 03-1638-1-1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTACGCGCTGCCCTGC
TATGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCACGTCCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCA
GCCGCATCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGC
GGCAACCTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGTGGTGCGCT
GCCCAATGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACAACGATCAGGTGCTGCTGGAGCGCG
CCATCGAACAGCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGAC
AGCGCAGACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGC
GGCGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.102

100

0.561
  comM Haemophilus influenzae Rd KW20

54.883

100

0.553
  comM Glaesserella parasuis strain SC1401

53.937

100

0.539
  comM Vibrio campbellii strain DS40M4

53.74

100

0.537
  comM Legionella pneumophila str. Paris

51.503

98.228

0.506
  comM Legionella pneumophila strain ERS1305867

51.503

98.228

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.49

100

0.457

Multiple sequence alignment