Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NTHI_RS01685 | Genome accession | NC_007146 |
| Coordinates | 345490..345996 (+) | Length | 168 a.a. |
| NCBI ID | WP_011271944.1 | Uniprot ID | Q4QNT8 |
| Organism | Haemophilus influenzae 86-028NP | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 340490..350996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NTHI_RS01680 (NTHI0355) | uvrA | 342506..345337 (-) | 2832 | WP_011271943.1 | excinuclease ABC subunit UvrA | - |
| NTHI_RS01685 (NTHI0356) | ssb | 345490..345996 (+) | 507 | WP_011271944.1 | single-stranded DNA-binding protein | Machinery gene |
| NTHI_RS01690 (NTHI0358) | - | 346174..346968 (-) | 795 | WP_011271945.1 | energy transducer TonB | - |
| NTHI_RS01695 (NTHI0359) | exbD | 346978..347421 (-) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| NTHI_RS01700 (NTHI0360) | exbB | 347425..347877 (-) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| NTHI_RS01705 (NTHI0361) | bcp | 348046..348513 (-) | 468 | WP_011271946.1 | thioredoxin-dependent thiol peroxidase | - |
| NTHI_RS01710 (NTHI0362) | dapA | 348614..349510 (+) | 897 | WP_005692198.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| NTHI_RS01715 (NTHI0363) | bamC | 349621..350250 (+) | 630 | WP_011271947.1 | outer membrane protein assembly factor BamC | - |
| NTHI_RS01720 (NTHI0364) | hpf | 350440..350763 (+) | 324 | WP_005653397.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18723.47 Da Isoelectric Point: 5.2649
>NTDB_id=24364 NTHI_RS01685 WP_011271944.1 345490..345996(+) (ssb) [Haemophilus influenzae 86-028NP]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYATEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYATEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=24364 NTHI_RS01685 WP_011271944.1 345490..345996(+) (ssb) [Haemophilus influenzae 86-028NP]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACGCCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACGCCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.222 |
100 |
0.72 |
| ssb | Vibrio cholerae strain A1552 |
55.495 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
50.867 |
100 |
0.524 |
| ssb | Neisseria gonorrhoeae MS11 |
50.867 |
100 |
0.524 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.27 |
100 |
0.363 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.363 |