Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ssp1_RS06280 | Genome accession | NZ_CP022881 |
| Coordinates | 1271036..1271353 (+) | Length | 105 a.a. |
| NCBI ID | WP_107533249.1 | Uniprot ID | A0A2T4PXN4 |
| Organism | Staphylococcus sp. M0911 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1266036..1276353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ssp1_RS06250 (Ssp1_12650) | - | 1266826..1267029 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| ssp1_RS06255 (Ssp1_12660) | - | 1267026..1268012 (+) | 987 | WP_002451886.1 | ROK family glucokinase | - |
| ssp1_RS06260 (Ssp1_12670) | - | 1268012..1268335 (+) | 324 | WP_002451887.1 | MTH1187 family thiamine-binding protein | - |
| ssp1_RS06265 (Ssp1_12680) | - | 1268339..1268962 (+) | 624 | WP_075778355.1 | MBL fold metallo-hydrolase | - |
| ssp1_RS06270 (Ssp1_12690) | comGA | 1269010..1269984 (+) | 975 | WP_107536305.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ssp1_RS06275 (Ssp1_12700) | comGB | 1269956..1271023 (+) | 1068 | WP_075777816.1 | competence type IV pilus assembly protein ComGB | - |
| ssp1_RS06280 (Ssp1_12710) | comGC | 1271036..1271353 (+) | 318 | WP_107533249.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ssp1_RS06290 (Ssp1_12730) | - | 1271969..1272466 (+) | 498 | WP_075777818.1 | competence type IV pilus minor pilin ComGF | - |
| ssp1_RS06300 (Ssp1_12740) | - | 1272625..1273143 (+) | 519 | WP_037552472.1 | shikimate kinase | - |
| ssp1_RS06305 (Ssp1_12750) | gcvT | 1273316..1274407 (+) | 1092 | WP_075777820.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ssp1_RS06310 (Ssp1_12760) | gcvPA | 1274426..1275775 (+) | 1350 | WP_107536283.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11716.69 Da Isoelectric Point: 8.4954
>NTDB_id=242475 ssp1_RS06280 WP_107533249.1 1271036..1271353(+) (comGC) [Staphylococcus sp. M0911]
MKKNDYSLKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQRSCKTGETISISNGEAIAN
MKKNDYSLKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQRSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=242475 ssp1_RS06280 WP_107533249.1 1271036..1271353(+) (comGC) [Staphylococcus sp. M0911]
ATGAAAAAAAACGACTACTCACTTAAAACTAAAGCTTTCACCTTAATCGAGATGCTATTAGTATTATTAATAATAAGTTT
ATTACTTATTTTAATTATTCCTAACATTGCCAAACAAACCGCTCATATACAATCAACCGGTTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCTTATACACTAAAGCATAATAGAAATCCTAATACTATACAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAGAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCAATTGCAAATTAA
ATGAAAAAAAACGACTACTCACTTAAAACTAAAGCTTTCACCTTAATCGAGATGCTATTAGTATTATTAATAATAAGTTT
ATTACTTATTTTAATTATTCCTAACATTGCCAAACAAACCGCTCATATACAATCAACCGGTTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCTTATACACTAAAGCATAATAGAAATCCTAATACTATACAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAGAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCAATTGCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
83.505 |
92.381 |
0.771 |
| comGC | Staphylococcus aureus N315 |
83.505 |
92.381 |
0.771 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
43.434 |
94.286 |
0.41 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
42.553 |
89.524 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
89.524 |
0.371 |