Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ssp1_RS06270 | Genome accession | NZ_CP022881 |
| Coordinates | 1269010..1269984 (+) | Length | 324 a.a. |
| NCBI ID | WP_107536305.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. M0911 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1264010..1274984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ssp1_RS06235 (Ssp1_12620) | rpmG | 1264447..1264596 (+) | 150 | WP_002451882.1 | 50S ribosomal protein L33 | - |
| ssp1_RS06240 (Ssp1_12630) | - | 1264831..1265385 (+) | 555 | WP_075778358.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ssp1_RS06245 (Ssp1_12640) | - | 1265382..1266836 (+) | 1455 | WP_118828154.1 | rhomboid family intramembrane serine protease | - |
| ssp1_RS06250 (Ssp1_12650) | - | 1266826..1267029 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| ssp1_RS06255 (Ssp1_12660) | - | 1267026..1268012 (+) | 987 | WP_002451886.1 | ROK family glucokinase | - |
| ssp1_RS06260 (Ssp1_12670) | - | 1268012..1268335 (+) | 324 | WP_002451887.1 | MTH1187 family thiamine-binding protein | - |
| ssp1_RS06265 (Ssp1_12680) | - | 1268339..1268962 (+) | 624 | WP_075778355.1 | MBL fold metallo-hydrolase | - |
| ssp1_RS06270 (Ssp1_12690) | comGA | 1269010..1269984 (+) | 975 | WP_107536305.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ssp1_RS06275 (Ssp1_12700) | comGB | 1269956..1271023 (+) | 1068 | WP_075777816.1 | competence type IV pilus assembly protein ComGB | - |
| ssp1_RS06280 (Ssp1_12710) | comGC | 1271036..1271353 (+) | 318 | WP_107533249.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ssp1_RS06290 (Ssp1_12730) | - | 1271969..1272466 (+) | 498 | WP_075777818.1 | competence type IV pilus minor pilin ComGF | - |
| ssp1_RS06300 (Ssp1_12740) | - | 1272625..1273143 (+) | 519 | WP_037552472.1 | shikimate kinase | - |
| ssp1_RS06305 (Ssp1_12750) | gcvT | 1273316..1274407 (+) | 1092 | WP_075777820.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37131.31 Da Isoelectric Point: 9.1190
>NTDB_id=242474 ssp1_RS06270 WP_107536305.1 1269010..1269984(+) (comGA) [Staphylococcus sp. M0911]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTPYETLDIGVYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQQRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTPYETLDIGVYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQQRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=242474 ssp1_RS06270 WP_107536305.1 1269010..1269984(+) (comGA) [Staphylococcus sp. M0911]
TTGAAAATATTATTTCAAGAGATAATTAATAAAGCCATAGTATATAAAGCAAGTGACGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACACCCTACGAAACACTTGATATAGGGGTTTACCGTAAACTAC
TCGTTTTTATGAAATTCCAAGCAGGATTGGATGTGTCGACACAGCAAATTGCTCAAAGTGGGCGTTACACCTATAAATTA
AGGTCAGTTTATTACTTACGTATTTCAACTCTCCCATTATCAATAGGCAGTGAAAGTTGTGTAATTAGAATCGTTCCTCA
ATATTTTCAAAATAAAAAGGAAACATATGAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGATTACTACTTT
TTACAGGACCTACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTATGCTCAAAAAGAACTGAATCTTAAT
GTGATATCTATAGAAGATCCTGTAGAACAAATTTTAAAAGGCATTACTCAAATCTCAGTAAATACTAAGGCTGGTATCAC
TTATGCAAGTTCATTTAAAGCAATACTTCGATGTGACCCAGATGTCATTTTAATTGGAGAAATCAGAGATGCAGAAATAG
CAAAGTATGTATTTCAAGCTAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGTAAGGGGGCGTTA
TTGAGATTATTAGAAATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGATTAATAAC
CACATCTAGTCAACAACGCCAATTAGTATGTGAACTTATGTTTAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCATTTAAACGTTTATCTTCAAAACTCGATGATATGACTAAAGAGGGTATTATATGTGAAACAATTGCT
GATAAATATATTTAA
TTGAAAATATTATTTCAAGAGATAATTAATAAAGCCATAGTATATAAAGCAAGTGACGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACACCCTACGAAACACTTGATATAGGGGTTTACCGTAAACTAC
TCGTTTTTATGAAATTCCAAGCAGGATTGGATGTGTCGACACAGCAAATTGCTCAAAGTGGGCGTTACACCTATAAATTA
AGGTCAGTTTATTACTTACGTATTTCAACTCTCCCATTATCAATAGGCAGTGAAAGTTGTGTAATTAGAATCGTTCCTCA
ATATTTTCAAAATAAAAAGGAAACATATGAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGATTACTACTTT
TTACAGGACCTACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTATGCTCAAAAAGAACTGAATCTTAAT
GTGATATCTATAGAAGATCCTGTAGAACAAATTTTAAAAGGCATTACTCAAATCTCAGTAAATACTAAGGCTGGTATCAC
TTATGCAAGTTCATTTAAAGCAATACTTCGATGTGACCCAGATGTCATTTTAATTGGAGAAATCAGAGATGCAGAAATAG
CAAAGTATGTATTTCAAGCTAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGTAAGGGGGCGTTA
TTGAGATTATTAGAAATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGATTAATAAC
CACATCTAGTCAACAACGCCAATTAGTATGTGAACTTATGTTTAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCATTTAAACGTTTATCTTCAAAACTCGATGATATGACTAAAGAGGGTATTATATGTGAAACAATTGCT
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
74.383 |
100 |
0.744 |
| comGA | Staphylococcus aureus N315 |
74.383 |
100 |
0.744 |