Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Kalk_RS09390 Genome accession   NZ_CP022684
Coordinates   2174195..2175694 (+) Length   499 a.a.
NCBI ID   WP_101894000.1    Uniprot ID   A0A2K9LMA2
Organism   Ketobacter alkanivorans strain GI5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2169195..2180694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Kalk_RS09380 (Kalk_09380) - 2169226..2171037 (+) 1812 WP_101893998.1 diguanylate cyclase -
  Kalk_RS09385 (Kalk_09385) - 2171165..2174104 (+) 2940 WP_101893999.1 7TM diverse intracellular signaling domain-containing protein -
  Kalk_RS09390 (Kalk_09390) comM 2174195..2175694 (+) 1500 WP_101894000.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Kalk_RS09395 (Kalk_09395) - 2175670..2177031 (-) 1362 WP_101894001.1 HAMP domain-containing sensor histidine kinase -
  Kalk_RS09400 (Kalk_09400) - 2177246..2178430 (+) 1185 WP_158643404.1 hypothetical protein -
  Kalk_RS09405 (Kalk_09405) - 2178430..2178870 (+) 441 WP_101894003.1 hypothetical protein -
  Kalk_RS09410 (Kalk_09410) - 2178989..2180035 (+) 1047 WP_101894004.1 hypothetical protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53994.97 Da        Isoelectric Point: 6.9775

>NTDB_id=241646 Kalk_RS09390 WP_101894000.1 2174195..2175694(+) (comM) [Ketobacter alkanivorans strain GI5]
MALAIVNTRARVGMNAPLVTVEVHLSNGLPAFNIVGLPDAAVRESKERVRSAILNSEFDFPQRRITINLAPADLPKDGGR
FDLPIAIGILAASEQIPAGALEHLEFVGELALSGELRPVEGVLTAAIATCDAQRSLFVPQANAEEAAVPRNSRVFACGHL
LQVCGQLKQPTSGEAYQPTLLPDTAQLDEYPDLADVKGQHQAKRALEVAAAGKHNLLMMGPPGAGKSMLAARLPGILPPM
TDQEMIETAAIHSVSQINQRPLFQRPIRAPHHTASGVALAGGGSNPKPGEISLAHNGILFLDELPEFPRKVLEVLREPLE
TGEIAISRAAQQVTYPANFQLIAALNPCPCGHPEQPPEGCNNPQLCCNKYQSKLSGPLLDRIDMHVRVDAMPISELQKQN
GGEPSASVRDRVTCARRIQLQRQGCANHDLTSKQLEQVCKLNEKDTLFLQQAVERLGLSARGYHRILKVARTLADLEQAE
HISKRNLTEALSYRALFSV

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=241646 Kalk_RS09390 WP_101894000.1 2174195..2175694(+) (comM) [Ketobacter alkanivorans strain GI5]
GTGGCATTGGCAATTGTAAACACACGCGCCCGCGTGGGCATGAACGCACCTCTGGTCACCGTGGAAGTACATCTTTCCAA
CGGTCTGCCTGCATTCAACATTGTTGGATTACCCGATGCCGCCGTACGTGAGAGCAAAGAACGGGTGCGCAGCGCCATCC
TGAATTCAGAGTTTGATTTCCCTCAGCGACGTATCACCATCAACCTGGCCCCTGCGGATCTACCTAAAGATGGCGGGCGC
TTTGATCTGCCCATCGCCATTGGCATTCTGGCGGCCTCCGAACAAATTCCAGCGGGCGCTCTGGAGCATTTAGAGTTCGT
GGGTGAACTGGCTCTGTCTGGTGAGCTGAGGCCAGTGGAGGGTGTGCTTACCGCCGCCATCGCCACCTGCGATGCCCAGC
GCAGCTTGTTTGTTCCCCAGGCCAATGCCGAGGAGGCCGCGGTTCCCCGTAACAGTCGAGTGTTTGCCTGTGGCCATTTA
CTGCAGGTGTGTGGGCAACTGAAGCAACCCACCTCTGGTGAGGCCTATCAACCCACACTACTGCCTGACACCGCGCAACT
GGATGAATATCCCGATCTGGCCGATGTTAAAGGGCAACATCAAGCCAAGCGAGCGTTGGAAGTGGCTGCGGCCGGAAAAC
ATAACCTGCTGATGATGGGGCCACCCGGTGCAGGCAAGTCCATGCTGGCAGCACGCCTGCCGGGCATCCTCCCTCCTATG
ACCGACCAGGAGATGATTGAAACCGCTGCCATCCATTCCGTATCCCAGATCAACCAGCGCCCACTGTTCCAGCGCCCGAT
TCGCGCACCCCATCACACAGCGTCGGGAGTCGCTCTGGCAGGCGGTGGCAGCAACCCCAAACCTGGCGAGATCTCACTGG
CTCATAACGGTATTCTATTTTTGGATGAGCTGCCGGAGTTCCCCCGCAAAGTGCTGGAGGTATTGCGAGAGCCATTGGAA
ACCGGTGAAATCGCGATCTCCCGCGCTGCACAACAAGTCACTTACCCCGCCAATTTCCAACTGATTGCCGCCCTCAACCC
CTGCCCATGCGGACACCCGGAGCAACCGCCAGAAGGCTGCAACAACCCTCAACTGTGCTGCAATAAATATCAAAGCAAAC
TATCCGGCCCGCTGCTGGATCGCATCGACATGCACGTGCGAGTGGATGCCATGCCCATCAGCGAATTGCAAAAACAAAAT
GGCGGAGAACCCAGCGCCAGTGTTCGGGATCGAGTCACCTGCGCTCGTCGGATACAGCTGCAACGGCAGGGCTGCGCTAA
TCACGATCTGACCTCCAAGCAACTGGAGCAGGTGTGTAAGCTTAACGAGAAGGATACTTTGTTTTTGCAACAGGCAGTGG
AACGGCTGGGGCTATCTGCACGCGGTTACCATCGAATATTGAAAGTGGCGCGTACCTTGGCCGATCTTGAGCAAGCGGAG
CATATCAGCAAGCGCAATCTTACGGAGGCTTTGTCTTACCGGGCATTGTTCTCTGTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9LMA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.289

100

0.555
  comM Vibrio campbellii strain DS40M4

55.2

100

0.553
  comM Haemophilus influenzae Rd KW20

53.36

100

0.541
  comM Glaesserella parasuis strain SC1401

52.456

100

0.535
  comM Legionella pneumophila str. Paris

51

100

0.511
  comM Legionella pneumophila strain ERS1305867

51

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.783

99.8

0.457

Multiple sequence alignment