Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   C5Y81_RS05745 Genome accession   NZ_CP028470
Coordinates   1159558..1161618 (+) Length   686 a.a.
NCBI ID   WP_001151485.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT4-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1154558..1166618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y81_RS05720 (C5Y81_05720) rpe 1155050..1155694 (+) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -
  C5Y81_RS05725 (C5Y81_05725) - 1155701..1156342 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  C5Y81_RS05730 (C5Y81_05730) rpmB 1156702..1156890 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  C5Y81_RS05735 (C5Y81_05735) - 1157333..1157707 (+) 375 WP_000171419.1 Asp23/Gls24 family envelope stress response protein -
  C5Y81_RS05740 (C5Y81_05740) fakA 1157722..1159368 (+) 1647 WP_000623910.1 fatty acid kinase catalytic subunit FakA -
  C5Y81_RS05745 (C5Y81_05745) recG 1159558..1161618 (+) 2061 WP_001151485.1 ATP-dependent DNA helicase RecG Machinery gene
  C5Y81_RS05750 (C5Y81_05750) fapR 1161821..1162393 (+) 573 WP_001548538.1 transcription factor FapR -
  C5Y81_RS05755 (C5Y81_05755) plsX 1162398..1163384 (+) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  C5Y81_RS05760 (C5Y81_05760) fabD 1163377..1164303 (+) 927 WP_000047349.1 ACP S-malonyltransferase -
  C5Y81_RS05765 (C5Y81_05765) fabG 1164296..1165030 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  C5Y81_RS05775 (C5Y81_05775) - 1165465..1165698 (+) 234 WP_000426914.1 acyl carrier protein -
  C5Y81_RS05780 (C5Y81_05780) rnc 1165814..1166545 (+) 732 WP_000043237.1 ribonuclease III -

Sequence


Protein


Download         Length: 686 a.a.        Molecular weight: 78315.85 Da        Isoelectric Point: 6.1562

>NTDB_id=241577 C5Y81_RS05745 WP_001151485.1 1159558..1161618(+) (recG) [Staphylococcus aureus strain IT4-R]
MAKVNLIESPYSLLQLKGIGPKKIEALQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=241577 C5Y81_RS05745 WP_001151485.1 1159558..1161618(+) (recG) [Staphylococcus aureus strain IT4-R]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGCATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTTGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCAAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTTGTTGCTGCAATTTGTATGTATGCATTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAAATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACTC
ATGCATTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACAAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACTTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516

  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474

  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474

  recG Neisseria meningitidis strain C311

39.82

97.376

0.388


Multiple sequence alignment