Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EBN1_RS12240 Genome accession   NC_006513
Coordinates   2571158..2572393 (-) Length   411 a.a.
NCBI ID   WP_011238274.1    Uniprot ID   Q5P276
Organism   Aromatoleum aromaticum EbN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2566158..2577393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN1_RS12210 (EB_RS12050) - 2566326..2566769 (-) 444 WP_011238268.1 barstar family protein -
  EBN1_RS12215 (EB_RS12055) - 2566766..2567131 (-) 366 WP_011238269.1 ribonuclease domain-containing protein -
  EBN1_RS12220 (EB_RS12060) aspS 2567349..2569148 (-) 1800 WP_011238270.1 aspartate--tRNA ligase -
  EBN1_RS12225 (EB_RS12065) - 2569193..2569819 (-) 627 WP_011238271.1 DUF502 domain-containing protein -
  EBN1_RS12230 (EB_RS12070) - 2569835..2570101 (-) 267 WP_011238272.1 zinc ribbon domain-containing protein -
  EBN1_RS12235 (EB_RS12075) pilD 2570240..2571091 (-) 852 WP_011238273.1 A24 family peptidase Machinery gene
  EBN1_RS12240 (EB_RS12080) pilC 2571158..2572393 (-) 1236 WP_011238274.1 type II secretion system F family protein Machinery gene
  EBN1_RS12245 (EB_RS12085) pilB 2572410..2574125 (-) 1716 WP_011238275.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EBN1_RS12250 (EB_RS12090) ccsA 2574241..2575065 (-) 825 WP_011238276.1 cytochrome c biogenesis protein CcsA -
  EBN1_RS12255 (EB_RS12095) ffh 2575108..2576466 (+) 1359 WP_011238277.1 signal recognition particle protein -
  EBN1_RS12260 (EB_RS12100) - 2576483..2577247 (+) 765 WP_011238278.1 EI24 domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44167.03 Da        Isoelectric Point: 10.0826

>NTDB_id=24117 EBN1_RS12240 WP_011238274.1 2571158..2572393(-) (pilC) [Aromatoleum aromaticum EbN1]
MATTTRAGRAVPARSRETLYSWEGKDKNGKLVRGEMRAGGPSLVQATLRRQGVLVSKVRKQKMSRGHKITDKDIALFTRQ
LATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRTDVETGSSLSQAFARHPLYFDKLFCNLVAAGEQAGILDGLLDRIA
TYKEKVLAIKGKIKSAMFYPIAVVVVAAIVVTVIMLFVVPEFKKVFTSFGADLPAPTLMVIAISDAFVAYWYILFGIIAA
TVIGIGAMYKRSDAMQIAVDRAVLQLPVVGDIIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNHVYVTATRQIQT
EVSTGTSLTVAMQNATVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEPIIMVFLGVVIGGLVVAM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=24117 EBN1_RS12240 WP_011238274.1 2571158..2572393(-) (pilC) [Aromatoleum aromaticum EbN1]
ATGGCGACGACAACGCGAGCCGGACGCGCAGTCCCTGCGCGCTCCAGGGAAACGCTCTACAGCTGGGAAGGCAAGGACAA
GAACGGCAAGCTCGTGCGCGGGGAAATGCGCGCGGGCGGGCCGTCGCTCGTGCAGGCGACACTGCGCCGCCAGGGCGTGC
TGGTGAGCAAGGTCAGAAAGCAGAAAATGTCGCGCGGTCACAAGATCACCGACAAGGACATCGCGCTCTTCACCCGCCAG
CTCGCGACGATGATGAAATCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGGCATCAAGGGTTCCGGCAATCCGAGCCT
CGCACGGCTGTTGAACGAGGTGCGCACCGACGTCGAGACCGGCTCGAGCCTGTCCCAGGCGTTCGCCAGGCATCCGCTCT
ATTTCGACAAGCTGTTCTGCAATCTCGTCGCTGCCGGCGAGCAGGCGGGAATTCTTGACGGCCTGCTGGACCGCATCGCG
ACCTACAAGGAAAAGGTTCTCGCGATCAAGGGCAAGATCAAGTCGGCGATGTTCTACCCGATCGCGGTCGTCGTCGTCGC
AGCGATCGTTGTCACCGTGATCATGCTGTTCGTCGTGCCCGAGTTCAAGAAAGTGTTCACCAGCTTCGGCGCCGACCTGC
CCGCGCCGACGCTGATGGTCATCGCCATCTCGGACGCCTTCGTCGCGTACTGGTACATCCTCTTCGGCATCATCGCGGCA
ACGGTGATCGGCATCGGTGCGATGTACAAACGCTCGGACGCGATGCAGATCGCCGTCGACCGCGCGGTGCTGCAGCTGCC
GGTGGTCGGCGACATTATCCGCAAGGCGACGATCGCGCGCTGGACACGCACGCTGGCGACGATGTTCGCTGCCGGCGTGC
CGCTCGTCGAAGCGCTCGACTCGGTCGGCGGCGCGTCGGGCAACCACGTCTACGTCACGGCGACGCGCCAGATCCAGACC
GAGGTCAGCACCGGCACCAGCCTCACGGTCGCGATGCAGAATGCGACGGTATTCCCGAGCATGGTCGTGCAGATGGTGTC
GATCGGCGAGGAATCCGGGCAGCTCGACTCGATGCTCGGCAAAGTCGCGGACTTCTTCGAACAGGAAGTCGACGACGCCG
TGGCCGGGCTGTCCACGCTGCTCGAGCCGATCATCATGGTGTTTCTCGGCGTGGTCATCGGTGGTCTCGTCGTCGCGATG
TACCTGCCGATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5P276

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.13

97.08

0.506
  pilC Legionella pneumophila strain ERS1305867

51.759

96.837

0.501
  pilG Neisseria gonorrhoeae MS11

50.126

96.594

0.484
  pilG Neisseria meningitidis 44/76-A

49.622

96.594

0.479
  pilC Acinetobacter baylyi ADP1

49.246

96.837

0.477
  pilC Acinetobacter baumannii D1279779

48.615

96.594

0.47
  pilC Vibrio cholerae strain A1552

40.488

99.757

0.404
  pilC Vibrio campbellii strain DS40M4

41.058

96.594

0.397
  pilC Thermus thermophilus HB27

39.75

97.324

0.387

Multiple sequence alignment