Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   TRNA_RS42790 Genome accession   NC_006270
Coordinates   4180069..4181280 (-) Length   403 a.a.
NCBI ID   WP_011198492.1    Uniprot ID   Q65CS2
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4175069..4186280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS42765 (BL02382) rlmH 4175821..4176300 (-) 480 WP_011198489.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  TRNA_RS43520 (BL05393) - 4176381..4176539 (-) 159 WP_003177948.1 CxxH/CxxC protein -
  TRNA_RS42770 (BL02381) - 4176738..4177220 (-) 483 WP_009330015.1 DUF4234 domain-containing protein -
  TRNA_RS42775 (BL02380) - 4177651..4178169 (-) 519 WP_011201784.1 GNAT family N-acetyltransferase -
  TRNA_RS42780 (BL02379) - 4178200..4178670 (-) 471 WP_003177954.1 membrane protein -
  TRNA_RS42785 (BL02377) - 4178927..4179772 (-) 846 WP_011198491.1 SAM hydrolase/SAM-dependent halogenase family protein -
  TRNA_RS42790 (BL02376) htrA 4180069..4181280 (-) 1212 WP_011198492.1 S1C family serine protease Regulator
  TRNA_RS42795 (BL02375) vicX 4181363..4182157 (-) 795 WP_011198493.1 MBL fold metallo-hydrolase Regulator
  TRNA_RS42800 (BL02374) - 4182172..4183020 (-) 849 WP_011198494.1 two-component system regulatory protein YycI -
  TRNA_RS42805 (BL02373) - 4183007..4184371 (-) 1365 WP_003177963.1 YycH family regulatory protein -
  TRNA_RS42810 (BL02372) walK 4184361..4186205 (-) 1845 WP_009330019.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43123.96 Da        Isoelectric Point: 5.7694

>NTDB_id=23976 TRNA_RS42790 WP_011198492.1 4180069..4181280(-) (htrA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MEFNHDEEKFVREKPVRSWRSFLFSSLVGAVIGALLTVFALPYLSQQGWLPYNLQVIEARGGQGAQQGGTVRNVSVNVNN
EVTQMVSKVSDSVVGVINIQKTGVWDGDSEAGTGSGVIYKKDGNTSHIVTNHHVIEGASQIEISLNDGTRIPAKLIGSDK
LMDLAVLQVNSNKIKAAAEFGDSDKVKTGEPVIAIGNPLGLQFSGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDA
AINPGNSGGGLFNIDGKVIGINSMKIAESAVEGIGLSIPANLAIPVIEDLETYGEVRRPYLGIEMKSLGDIASYHWQETL
KLPKNVTSGVVVMGVQPVSPAGRAGLKELDVIVEFNGDRVYDIVDLRKKLYTKNVGDKVKIKYLRGGKEKTTEVKLTRSQ
LGS

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=23976 TRNA_RS42790 WP_011198492.1 4180069..4181280(-) (htrA) [Bacillus licheniformis DSM 13 = ATCC 14580]
GTGGAGTTTAATCATGATGAGGAAAAATTCGTTCGGGAAAAGCCGGTGAGAAGTTGGAGAAGCTTTTTGTTTTCAAGCCT
GGTCGGCGCCGTCATCGGCGCTCTTTTAACAGTGTTTGCCTTGCCGTATCTCTCGCAGCAGGGATGGCTGCCGTATAATC
TGCAAGTCATCGAAGCGCGCGGCGGCCAAGGAGCACAGCAGGGCGGGACGGTCCGCAATGTATCCGTCAACGTGAATAAT
GAAGTCACGCAAATGGTCTCTAAGGTTTCTGATTCTGTTGTCGGCGTTATCAACATCCAAAAGACAGGTGTATGGGATGG
TGACAGCGAAGCGGGAACAGGCTCGGGCGTTATTTATAAAAAGGACGGCAACACATCCCACATTGTGACAAACCACCATG
TCATTGAAGGGGCGTCCCAAATAGAAATCAGCCTGAATGACGGAACACGGATTCCGGCAAAACTGATCGGCAGCGATAAG
CTGATGGATCTGGCCGTCCTGCAAGTCAACAGCAACAAAATAAAAGCAGCTGCCGAATTTGGAGATTCTGATAAAGTGAA
GACAGGCGAGCCTGTCATCGCGATTGGAAACCCGCTCGGCCTGCAGTTTTCAGGCTCTGTTACACAAGGAATCATCTCAG
GAACCGAACGCGCTGTGCCGGTCGATTCCAACGGAGACGGACAGCCGGACTGGAACGCCGAAGTACTGCAGACGGATGCT
GCCATTAACCCGGGTAACAGCGGAGGCGGGCTGTTTAATATTGATGGAAAAGTCATCGGCATTAATTCGATGAAAATCGC
TGAATCAGCCGTCGAAGGCATCGGTCTGAGCATTCCGGCCAACCTTGCCATTCCGGTTATCGAAGATTTGGAAACGTACG
GTGAAGTGAGACGGCCGTATCTCGGAATTGAGATGAAATCACTTGGCGATATCGCAAGCTACCACTGGCAGGAAACGCTT
AAACTGCCGAAAAACGTAACATCAGGCGTAGTTGTGATGGGTGTTCAGCCGGTATCTCCTGCAGGCAGAGCCGGTCTGAA
AGAGCTCGATGTCATCGTCGAATTTAACGGTGACCGTGTTTACGATATCGTTGATCTGCGTAAAAAGCTTTACACCAAAA
ACGTCGGCGACAAGGTAAAAATCAAATACCTGCGGGGCGGAAAAGAAAAGACAACAGAAGTAAAGCTGACCCGATCCCAA
TTAGGAAGCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(299-396)

Peptidase family M50 (Peptidase_M50)

(239-398)

Trypsin-like peptidase domain (Trypsin_2)

(114-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65CS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

43.799

94.045

0.412
  htrA Streptococcus mutans UA159

45.17

87.345

0.395
  htrA Streptococcus pneumoniae D39

46.847

82.63

0.387
  htrA Streptococcus pneumoniae TIGR4

46.847

82.63

0.387
  htrA Streptococcus pneumoniae R6

46.847

82.63

0.387
  htrA Streptococcus pneumoniae Rx1

46.847

82.63

0.387
  htrA Streptococcus gordonii str. Challis substr. CH1

42.693

86.6

0.37

Multiple sequence alignment