Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   TRNA_RS42795 Genome accession   NC_006270
Coordinates   4181363..4182157 (-) Length   264 a.a.
NCBI ID   WP_011198493.1    Uniprot ID   Q65CS1
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4176363..4187157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS43520 (BL05393) - 4176381..4176539 (-) 159 WP_003177948.1 CxxH/CxxC protein -
  TRNA_RS42770 (BL02381) - 4176738..4177220 (-) 483 WP_009330015.1 DUF4234 domain-containing protein -
  TRNA_RS42775 (BL02380) - 4177651..4178169 (-) 519 WP_011201784.1 GNAT family N-acetyltransferase -
  TRNA_RS42780 (BL02379) - 4178200..4178670 (-) 471 WP_003177954.1 membrane protein -
  TRNA_RS42785 (BL02377) - 4178927..4179772 (-) 846 WP_011198491.1 SAM hydrolase/SAM-dependent halogenase family protein -
  TRNA_RS42790 (BL02376) htrA 4180069..4181280 (-) 1212 WP_011198492.1 S1C family serine protease Regulator
  TRNA_RS42795 (BL02375) vicX 4181363..4182157 (-) 795 WP_011198493.1 MBL fold metallo-hydrolase Regulator
  TRNA_RS42800 (BL02374) - 4182172..4183020 (-) 849 WP_011198494.1 two-component system regulatory protein YycI -
  TRNA_RS42805 (BL02373) - 4183007..4184371 (-) 1365 WP_003177963.1 YycH family regulatory protein -
  TRNA_RS42810 (BL02372) walK 4184361..4186205 (-) 1845 WP_009330019.1 cell wall metabolism sensor histidine kinase WalK -
  TRNA_RS42815 (BL02371) walR 4186213..4186920 (-) 708 WP_003177967.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29218.20 Da        Isoelectric Point: 5.9802

>NTDB_id=23977 TRNA_RS42795 WP_011198493.1 4181363..4182157(-) (vicX) [Bacillus licheniformis DSM 13 = ATCC 14580]
MSLQFSVLASGSTGNALYLETDDHAFLVDAGLSGKAMEGLMAQIDRKLDQLDGIFVTHEHSDHIKGLGVLARKYELPVYA
NEKTWKAMEGHIGKMDNGQKFVFPMETVKSFGSLDVESFGVSHDAAEPMFYVFHYNGRKLALITDTGYVSDRMKGIIRSA
NAFVFESNHDVGMLQMGRYPWNIKRRILSDVGHVSNEDAALAMTDVIGNETSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFAAGETFDLYDTDPKKPTPLVAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=23977 TRNA_RS42795 WP_011198493.1 4181363..4182157(-) (vicX) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAGCCTGCAATTTAGCGTACTTGCGAGCGGGAGTACCGGTAATGCTTTATATTTGGAAACCGATGACCACGCTTTTTT
AGTTGACGCAGGACTTAGCGGGAAGGCGATGGAAGGGCTGATGGCGCAAATTGATCGAAAGCTTGATCAGCTCGACGGCA
TCTTTGTTACACATGAGCACAGTGACCATATAAAAGGGCTTGGCGTGCTGGCAAGAAAATATGAGCTGCCCGTTTACGCC
AATGAAAAAACGTGGAAGGCGATGGAAGGGCATATCGGCAAAATGGATAACGGCCAAAAGTTCGTTTTTCCAATGGAAAC
CGTCAAGTCATTCGGCTCCCTTGATGTCGAATCGTTCGGGGTATCCCATGATGCCGCAGAGCCGATGTTTTACGTTTTTC
ATTACAATGGCCGAAAGCTCGCTTTGATTACGGATACGGGCTATGTCAGCGACAGAATGAAAGGCATCATCCGCTCGGCA
AACGCTTTTGTTTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGCCGCTATCCGTGGAACATCAAGCGCCGGAT
TCTAAGCGACGTCGGACACGTATCCAATGAGGACGCGGCACTCGCAATGACCGATGTAATCGGCAATGAGACATCGAGAA
TTTATTTGGCTCATTTAAGCCAGGACAACAACATGAAAGAGCTGGCAAGAATGTCTGTGCAGCAAACGCTGGCTGCCAAA
GGATTTGCGGCAGGAGAAACGTTTGACTTATATGATACCGATCCTAAGAAACCGACGCCTCTCGTAGCGGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65CS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment