Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   CGZ53_RS09430 Genome accession   NZ_CP022435
Coordinates   1861558..1862754 (+) Length   398 a.a.
NCBI ID   WP_199763725.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856558..1867754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS09405 (CGZ53_09400) - 1857781..1860351 (+) 2571 WP_100912345.1 YfhO family protein -
  CGZ53_RS09425 (CGZ53_09420) rlmH 1860887..1861366 (-) 480 WP_015912152.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CGZ53_RS09430 (CGZ53_09425) htrA 1861558..1862754 (+) 1197 WP_199763725.1 S1C family serine protease Regulator
  CGZ53_RS09435 (CGZ53_09430) spo0J 1862832..1863608 (+) 777 WP_015912154.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42391.90 Da        Isoelectric Point: 5.1117

>NTDB_id=239406 CGZ53_RS09430 WP_199763725.1 1861558..1862754(+) (htrA) [Streptococcus uberis strain NZ01]
MSKFKHFFKYIMIVGLGFIGGALAFFVMNLLPHPSSTTNLNNPTTTSKVTYKNTTNTTKAVKVIQDAVVSVVNYQKNDSL
NSAMDIFSQGDSSTKENDGLSIYSEGSGVIYKKDGDSTYLVTNNHVIDKAERIEIILADGSKVVGKLIGADTYSDLAVVK
ISSDKIKTVAQFADSSKINIGEVAIAIGSPLGTEYANSVTEGIVSSLSRTVTLKNEEGQTVSTNAIQTDAAINPGNSGGP
LINIEGQIIGINSSKISQSKSSGNAVEGMGFAIPANDVIKIINQLESKGEVVRPALGISMVNLSDLSTNALDQLKVPKNV
TSGIVVAKVVDNMPASGKLEQYDIITEIDGEEVSSTSDLQSILYGHDINDTVKITFYRGNDKKSTTIELTKTTKDLEK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=239406 CGZ53_RS09430 WP_199763725.1 1861558..1862754(+) (htrA) [Streptococcus uberis strain NZ01]
GTGTCTAAGTTTAAACATTTTTTCAAATACATAATGATAGTCGGATTAGGCTTCATTGGTGGTGCTTTAGCATTCTTTGT
GATGAATCTGTTACCACATCCATCATCCACAACAAATCTTAATAACCCAACGACGACAAGTAAAGTAACCTATAAAAATA
CTACTAATACGACTAAAGCTGTTAAAGTGATTCAAGATGCAGTTGTTTCTGTAGTTAACTATCAAAAAAATGATTCTTTA
AACTCAGCCATGGATATTTTTAGTCAAGGTGATTCATCAACTAAAGAGAATGATGGACTTTCTATTTATAGTGAAGGATC
AGGTGTTATATACAAAAAAGATGGTGATTCTACATATCTGGTAACCAACAACCACGTAATAGACAAAGCTGAAAGAATTG
AAATTATTTTAGCTGATGGTTCAAAAGTTGTTGGGAAATTAATTGGTGCTGACACTTATTCTGACCTGGCTGTTGTAAAA
ATTTCTTCAGACAAAATTAAGACTGTAGCTCAGTTTGCAGATTCTTCCAAAATAAACATAGGTGAAGTTGCAATTGCAAT
TGGTAGTCCTCTTGGAACAGAATATGCTAATTCCGTAACTGAAGGAATTGTTTCAAGTTTAAGTAGAACAGTAACTTTAA
AAAATGAAGAAGGACAAACTGTTTCAACTAATGCCATTCAAACAGATGCTGCTATTAACCCTGGAAACTCTGGCGGACCT
TTAATTAATATTGAAGGACAAATTATTGGAATAAACTCTAGCAAAATCTCACAGTCTAAATCATCTGGAAATGCAGTCGA
AGGAATGGGATTTGCAATTCCAGCTAATGACGTTATTAAAATTATTAACCAACTTGAAAGCAAAGGCGAAGTAGTTCGAC
CTGCATTAGGTATTTCAATGGTTAATCTAAGTGATTTATCAACAAATGCCCTTGATCAGCTCAAAGTTCCAAAAAATGTT
ACTAGTGGTATCGTAGTTGCTAAAGTCGTAGACAATATGCCTGCCTCAGGAAAACTTGAACAATATGATATTATCACTGA
AATTGATGGGGAAGAAGTGAGCAGTACAAGTGATTTACAAAGTATTCTGTATGGGCATGACATTAATGATACCGTAAAAA
TCACTTTTTATAGAGGTAATGATAAGAAATCTACTACTATTGAATTAACTAAAACTACCAAAGATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(294-389)

Trypsin-like peptidase domain (Trypsin_2)

(106-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.785

99.246

0.623
  htrA Streptococcus pneumoniae Rx1

56.091

98.995

0.555
  htrA Streptococcus pneumoniae D39

56.091

98.995

0.555
  htrA Streptococcus pneumoniae R6

56.091

98.995

0.555
  htrA Streptococcus pneumoniae TIGR4

56.091

98.995

0.555
  htrA Streptococcus mitis NCTC 12261

55.838

98.995

0.553
  htrA Streptococcus gordonii str. Challis substr. CH1

55.584

98.995

0.55

Multiple sequence alignment