Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   CGZ53_RS09435 Genome accession   NZ_CP022435
Coordinates   1862832..1863608 (+) Length   258 a.a.
NCBI ID   WP_015912154.1    Uniprot ID   B9DWF5
Organism   Streptococcus uberis strain NZ01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1857832..1868608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS09425 (CGZ53_09420) rlmH 1860887..1861366 (-) 480 WP_015912152.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CGZ53_RS09430 (CGZ53_09425) htrA 1861558..1862754 (+) 1197 WP_199763725.1 S1C family serine protease Regulator
  CGZ53_RS09435 (CGZ53_09430) spo0J 1862832..1863608 (+) 777 WP_015912154.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 258 a.a.        Molecular weight: 29575.10 Da        Isoelectric Point: 9.8609

>NTDB_id=239407 CGZ53_RS09435 WP_015912154.1 1862832..1863608(+) (spo0J) [Streptococcus uberis strain NZ01]
MSENFKIIKIEDIVANPYQPRIHFNEKDLEELANSIKVNGLIQPIIVRQSEVFGYELIAGERRLKASKLAGLNEIPAVIK
KISNSESMHQAIVENLQRSDLNPIEEARAFQNIIEKNNITHEHLAKYMGKSRPYISNSIRLLQLPEIILKAIEENKISSG
HARALLALDDSHLQEKYFKQIIKQHLNVRQTESLIKSSKKGHTLKREEKNIFIKAIEEELAKTLGITVQLSQKKDGSGTL
QFHYQNTEELNRVINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=239407 CGZ53_RS09435 WP_015912154.1 1862832..1863608(+) (spo0J) [Streptococcus uberis strain NZ01]
ATGTCAGAAAATTTCAAAATAATAAAGATTGAGGATATTGTAGCTAATCCCTACCAACCTCGGATTCATTTTAATGAAAA
AGATCTAGAAGAATTAGCTAACTCAATCAAAGTCAATGGACTTATTCAACCCATTATTGTGCGTCAATCAGAGGTCTTTG
GTTATGAATTAATTGCTGGAGAAAGAAGATTGAAGGCTTCCAAATTAGCAGGTTTAAATGAGATTCCAGCAGTCATTAAA
AAAATTTCAAATAGCGAAAGTATGCATCAGGCAATTGTTGAAAATCTGCAACGATCTGACTTAAATCCAATTGAAGAAGC
AAGAGCTTTTCAAAATATTATTGAAAAAAATAACATTACTCACGAGCATTTGGCTAAGTATATGGGAAAATCTAGACCGT
ATATTTCAAATAGCATACGTTTGCTTCAATTACCAGAAATTATTCTAAAGGCTATTGAAGAAAATAAAATTAGTTCAGGA
CATGCACGCGCTTTACTTGCTCTAGATGATTCCCACTTGCAAGAAAAATATTTTAAACAAATCATAAAACAACATCTCAA
TGTTAGACAGACAGAATCCTTAATCAAATCAAGCAAAAAAGGTCATACATTAAAAAGAGAAGAAAAGAATATCTTTATAA
AAGCTATTGAAGAAGAACTTGCAAAAACACTAGGAATTACTGTTCAATTATCTCAAAAAAAAGATGGAAGTGGTACACTT
CAATTTCATTATCAAAATACCGAAGAACTCAACAGAGTTATCAACAAACTCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B9DWF5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.253

99.612

0.55


Multiple sequence alignment