Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | CDV26_RS13360 | Genome accession | NZ_CP022132 |
| Coordinates | 2057199..2057651 (-) | Length | 150 a.a. |
| NCBI ID | WP_245806451.1 | Uniprot ID | - |
| Organism | Francisella halioticida strain DSM 23729 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2052199..2062651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDV26_RS10910 (CDV26_10910) | nusA | 2052275..2053744 (-) | 1470 | WP_088773287.1 | transcription termination factor NusA | - |
| CDV26_RS10915 (CDV26_10915) | rimP | 2053761..2054216 (-) | 456 | WP_169709736.1 | ribosome maturation factor RimP | - |
| CDV26_RS10925 (CDV26_10925) | hemE | 2054445..2055479 (-) | 1035 | WP_088773289.1 | uroporphyrinogen decarboxylase | - |
| CDV26_RS10930 (CDV26_10930) | - | 2055717..2056040 (+) | 324 | WP_157671387.1 | transposase | - |
| CDV26_RS10935 (CDV26_10935) | - | 2056222..2056773 (+) | 552 | WP_088773314.1 | IS3 family transposase | - |
| CDV26_RS13355 | - | 2056755..2057123 (-) | 369 | WP_245806450.1 | ATP-binding protein | - |
| CDV26_RS13360 | comM | 2057199..2057651 (-) | 453 | WP_245806451.1 | magnesium chelatase domain-containing protein | Machinery gene |
| CDV26_RS10945 (CDV26_10945) | - | 2057638..2057832 (-) | 195 | WP_088773290.1 | accessory factor UbiK family protein | - |
| CDV26_RS10950 (CDV26_10950) | - | 2057906..2059357 (-) | 1452 | WP_088773291.1 | NADH-quinone oxidoreductase subunit N | - |
| CDV26_RS10955 (CDV26_10955) | - | 2059373..2060962 (-) | 1590 | WP_088773292.1 | complex I subunit 4 family protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16209.15 Da Isoelectric Point: 10.8197
>NTDB_id=237126 CDV26_RS13360 WP_245806451.1 2057199..2057651(-) (comM) [Francisella halioticida strain DSM 23729]
MIKADMSLAILKSRAQLGIEAPSVSIKVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLL
KSSGRFDLPIALGVLYASRQINPTKKIDDYKFAGELSLSGKLRKISSAISMAIKCVQNNKKLIIPLQNEK
MIKADMSLAILKSRAQLGIEAPSVSIKVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLL
KSSGRFDLPIALGVLYASRQINPTKKIDDYKFAGELSLSGKLRKISSAISMAIKCVQNNKKLIIPLQNEK
Nucleotide
Download Length: 453 bp
>NTDB_id=237126 CDV26_RS13360 WP_245806451.1 2057199..2057651(-) (comM) [Francisella halioticida strain DSM 23729]
ATGATAAAGGCTGATATGTCTTTAGCAATATTAAAAAGTAGAGCTCAGCTCGGTATTGAGGCTCCATCAGTATCTATAAA
AGTTCATTTATCCAATGGGTTGCCAGGATTATCAATAGTTGGTCTACCTGAAGCAGCTGTTAAAGAAAGTAAAGATCGTG
TCCGTAGTGCAATTATAAACTCGGGTTTTAATTTTCCAAATAAACGAATAACTATAAATCTTGCTCCTGCTGATTTGCTT
AAAAGTAGCGGACGTTTCGATTTGCCAATAGCATTAGGTGTTTTATACGCTTCTAGACAAATTAATCCAACCAAAAAAAT
TGATGATTATAAGTTTGCTGGCGAATTATCTTTAAGTGGAAAACTTAGGAAAATATCTAGTGCTATCTCAATGGCAATAA
AATGCGTACAGAATAATAAAAAACTTATTATTCCACTTCAAAATGAAAAGTAA
ATGATAAAGGCTGATATGTCTTTAGCAATATTAAAAAGTAGAGCTCAGCTCGGTATTGAGGCTCCATCAGTATCTATAAA
AGTTCATTTATCCAATGGGTTGCCAGGATTATCAATAGTTGGTCTACCTGAAGCAGCTGTTAAAGAAAGTAAAGATCGTG
TCCGTAGTGCAATTATAAACTCGGGTTTTAATTTTCCAAATAAACGAATAACTATAAATCTTGCTCCTGCTGATTTGCTT
AAAAGTAGCGGACGTTTCGATTTGCCAATAGCATTAGGTGTTTTATACGCTTCTAGACAAATTAATCCAACCAAAAAAAT
TGATGATTATAAGTTTGCTGGCGAATTATCTTTAAGTGGAAAACTTAGGAAAATATCTAGTGCTATCTCAATGGCAATAA
AATGCGTACAGAATAATAAAAAACTTATTATTCCACTTCAAAATGAAAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
59.441 |
95.333 |
0.567 |
| comM | Vibrio cholerae strain A1552 |
57.343 |
95.333 |
0.547 |
| comM | Glaesserella parasuis strain SC1401 |
55.245 |
95.333 |
0.527 |
| comM | Legionella pneumophila strain ERS1305867 |
56.204 |
91.333 |
0.513 |
| comM | Legionella pneumophila str. Paris |
56.204 |
91.333 |
0.513 |
| comM | Haemophilus influenzae Rd KW20 |
53.147 |
95.333 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
43.284 |
89.333 |
0.387 |