Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7A17_RS27095 Genome accession   NZ_CP027657
Coordinates   3565188..3565556 (-) Length   122 a.a.
NCBI ID   WP_106739063.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560188..3570556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS16620 (C7A17_16620) ileS 3560268..3563102 (+) 2835 WP_106739059.1 isoleucine--tRNA ligase -
  C7A17_RS16625 (C7A17_16625) lspA 3563095..3563604 (+) 510 WP_106739060.1 signal peptidase II -
  C7A17_RS16630 (C7A17_16630) - 3563601..3564038 (+) 438 WP_106739061.1 peptidylprolyl isomerase -
  C7A17_RS16635 (C7A17_16635) ispH 3564177..3565121 (+) 945 WP_106739062.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C7A17_RS27095 (C7A17_16640) pilE 3565188..3565556 (-) 369 WP_106739063.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  C7A17_RS26795 - 3565566..3570266 (-) 4701 WP_158704672.1 pilus assembly protein PilY -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 12725.58 Da        Isoelectric Point: 8.4919

>NTDB_id=236977 C7A17_RS27095 WP_106739063.1 3565188..3565556(-) (pilE) [Ectopseudomonas mendocina strain NEB698]
MRQQQGFTLIEVMIVVVIIAILAAIAIPSYTAYLDRAACEDGKSLIMQAAANAERRRAQNAGSYVGFNALPQNTSEFSIA
VGNITATAYTLTATATGRLAAGTLTLTAANVRGGSLAGQCNW

Nucleotide


Download         Length: 369 bp        

>NTDB_id=236977 C7A17_RS27095 WP_106739063.1 3565188..3565556(-) (pilE) [Ectopseudomonas mendocina strain NEB698]
ATGAGACAACAACAAGGCTTTACACTGATTGAGGTGATGATCGTTGTAGTGATCATTGCCATTCTCGCAGCGATCGCAAT
ACCAAGTTACACAGCGTATCTTGATCGAGCGGCCTGCGAAGATGGGAAATCGCTAATTATGCAGGCAGCGGCAAATGCCG
AGCGACGACGAGCACAGAACGCAGGCAGTTACGTTGGATTCAACGCCCTACCACAGAATACGAGCGAGTTCTCAATTGCA
GTGGGTAACATTACTGCGACTGCTTATACCCTAACTGCCACAGCGACTGGCAGGCTTGCAGCCGGCACATTGACTCTGAC
TGCCGCAAATGTGAGAGGTGGGAGTCTAGCAGGGCAATGTAACTGGTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

38.889

100

0.402
  pilA2 Legionella pneumophila strain ERS1305867

38.889

100

0.402
  pilE Acinetobacter baumannii D1279779

39.496

97.541

0.385
  comP Acinetobacter baylyi ADP1

41.964

91.803

0.385
  pilE Legionella pneumophila str. Paris

37.815

97.541

0.369
  pilE Legionella pneumophila strain ERS1305867

37.815

97.541

0.369
  pilA Acinetobacter baumannii strain A118

41.284

89.344

0.369