Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   XM38_RS19480 Genome accession   NZ_CP021983
Coordinates   4294753..4295118 (-) Length   121 a.a.
NCBI ID   WP_080810017.1    Uniprot ID   A0A1Z3HS22
Organism   Halomicronema hongdechloris C2206     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4289753..4300118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM38_RS19470 (XM38_040700) - 4291233..4294178 (-) 2946 WP_088430782.1 methyl-accepting chemotaxis protein -
  XM38_RS19475 (XM38_040710) - 4294211..4294741 (-) 531 WP_080810015.1 CheW domain-containing protein -
  XM38_RS19480 (XM38_040720) pilH 4294753..4295118 (-) 366 WP_080810017.1 response regulator transcription factor Machinery gene
  XM38_RS19485 (XM38_040730) - 4295322..4296593 (-) 1272 WP_080810020.1 response regulator -
  XM38_RS19490 (XM38_040740) hmpF 4297141..4298898 (+) 1758 WP_080810023.1 pilus motility taxis protein HmpF -
  XM38_RS19495 (XM38_040750) - 4298917..4299120 (+) 204 WP_080810025.1 glycogen debranching protein -
  XM38_RS19500 (XM38_040760) - 4299214..4299552 (-) 339 WP_080810028.1 hypothetical protein -
  XM38_RS19505 (XM38_040770) - 4299793..4300002 (+) 210 WP_080810030.1 RNA-binding S4 domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13436.69 Da        Isoelectric Point: 4.6677

>NTDB_id=235610 XM38_RS19480 WP_080810017.1 4294753..4295118(-) (pilH) [Halomicronema hongdechloris C2206]
MSTVLVVEDSLPQREMISELLQTSGLKVMVASDGLEALESIQGHPPDLVVLDIVMPRMNGYEVCRRLKADPLTQNVPIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPMELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=235610 XM38_RS19480 WP_080810017.1 4294753..4295118(-) (pilH) [Halomicronema hongdechloris C2206]
ATGAGCACGGTTTTAGTCGTTGAAGATAGCCTTCCCCAACGCGAAATGATCAGCGAGCTGCTGCAAACCAGTGGTCTAAA
GGTGATGGTTGCCAGTGATGGGCTAGAAGCTCTGGAGTCTATTCAGGGACATCCTCCTGATCTGGTCGTGCTCGACATCG
TTATGCCCCGCATGAACGGTTACGAAGTCTGTCGGCGTCTCAAGGCTGATCCATTAACTCAAAATGTTCCCATCGTGATG
TGCTCCTCTAAAGGGGAGGAGTTTGATCGCTATTGGGGCATGAAGCAAGGAGCTGATGCCTACATTGCCAAACCTTTTCA
GCCCATGGAACTCGTGGGCACTGTAAAACAGTTACTGCGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3HS22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.38

100

0.744
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment