Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   TRNA_RS23430 Genome accession   NC_006270
Coordinates   365529..365975 (-) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 360529..370975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS23405 (BL01818) - 361136..362011 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  TRNA_RS23410 (BL01716) - 362195..362746 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  TRNA_RS23415 (BL01717) - 362843..363568 (+) 726 WP_003178804.1 AAA family ATPase -
  TRNA_RS23420 (BL01718) - 363638..365074 (+) 1437 WP_011197532.1 glycoside hydrolase family 1 protein -
  TRNA_RS23425 (BL01819) nin/comJ 365113..365511 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  TRNA_RS23430 (BL01820) nucA/comI 365529..365975 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  TRNA_RS43795 (BL07081) - 366274..366444 (+) 171 WP_011197533.1 hypothetical protein -
  TRNA_RS23435 (BL01719) - 366450..367253 (+) 804 WP_009330243.1 serine/threonine protein kinase -
  TRNA_RS23440 (BL01821) - 367273..368882 (-) 1610 Protein_365 methyl-accepting chemotaxis protein -
  TRNA_RS23445 (BL01823) - 369073..369813 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=23545 TRNA_RS23430 WP_009330244.1 365529..365975(-) (nucA/comI) [Bacillus licheniformis DSM 13 = ATCC 14580]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=23545 TRNA_RS23430 WP_009330244.1 365529..365975(-) (nucA/comI) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment