Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   S101395_RS17880 Genome accession   NZ_CP021920
Coordinates   3384526..3386346 (-) Length   606 a.a.
NCBI ID   WP_006636842.1    Uniprot ID   -
Organism   Bacillus sonorensis strain SRCM101395     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3379526..3391346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS17840 (S101395_03595) - 3379885..3380520 (-) 636 WP_006636849.1 GTP pyrophosphokinase -
  S101395_RS17845 (S101395_03596) - 3380551..3380916 (-) 366 WP_006636848.1 hypothetical protein -
  S101395_RS17850 (S101395_03597) - 3381040..3381612 (+) 573 WP_006636847.1 CYTH domain-containing protein -
  S101395_RS17855 (S101395_03598) - 3381625..3382296 (+) 672 WP_006636846.1 lytic transglycosylase domain-containing protein -
  S101395_RS17860 (S101395_03599) - 3382584..3382982 (+) 399 WP_006636845.1 hemoglobin YjbI -
  S101395_RS17865 (S101395_03600) spxH 3383039..3383872 (+) 834 WP_373870167.1 protease adaptor protein SpxH -
  S101395_RS25720 (S101395_03601) - 3384283..3384450 (+) 168 WP_006636843.1 hypothetical protein -
  S101395_RS17880 (S101395_03602) pepF 3384526..3386346 (-) 1821 WP_006636842.1 oligoendopeptidase F Regulator
  S101395_RS17885 (S101395_03603) - 3386560..3387708 (-) 1149 WP_006636841.1 competence protein CoiA family protein -
  S101395_RS17890 (S101395_03604) mecA 3387887..3388525 (-) 639 WP_006636840.1 adaptor protein MecA Regulator
  S101395_RS25365 - 3388507..3388632 (-) 126 Protein_3524 hypothetical protein -
  S101395_RS17895 (S101395_03605) - 3388801..3389463 (+) 663 WP_006636839.1 TerC family protein -
  S101395_RS17900 (S101395_03606) spxA 3389496..3389891 (-) 396 WP_006636838.1 transcriptional regulator SpxA -
  S101395_RS17905 (S101395_03607) - 3390069..3390647 (-) 579 WP_006636837.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69953.53 Da        Isoelectric Point: 4.8718

>NTDB_id=234904 S101395_RS17880 WP_006636842.1 3384526..3386346(-) (pepF) [Bacillus sonorensis strain SRCM101395]
MAEENQTKKLPARDEVKQEDTWRLEDIFPSDEAWNEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEQ
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDENGEKRQITHGNYITFLESENRDVRRDAFKAVYDTYGRFKNTLAST
LSGAIKKDNFYAKVKHYQSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYGQAKDYMIKGLAPLGEEYTSILKEGLNNRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIDFL
KAGSSDYPIEVLKKAGVDMTTSDPIEAACKKFEEQLNEMEELLLKK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=234904 S101395_RS17880 WP_006636842.1 3384526..3386346(-) (pepF) [Bacillus sonorensis strain SRCM101395]
GTGGCTGAAGAAAACCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAGGACACGTGGAGACTCGAGGATAT
CTTTCCATCTGATGAAGCCTGGAATGAGGAATTTCAAGCGGTTAAAGAGCTGCTGCCTAAGCTCTCCGAATTTAAGGGAA
GGCTCGGCCATTCCGCCGACGATTTATATGAAGCATTGACATATCAGGACAAGGTCATGGAAAGGCTCGGGAAGCTGTAT
ACTTACGCTCATATGCGCTATGATCAGGATACAGGCAATTCATTTTATCAGGGTCTGAATGATAAAGCCTCCAACCTTTA
TACACAGGCTGCCAGCGCGACAGCTTATATGGTGCCGGAGATTTTATCGATACAGGAAGACAAGCTTCAGCAGTTCCTTT
TAGAAAAAGAGGAACTAAAGCTCTACTCGCATGCGCTTGAAGAAATCAACAAAGAGCGGCCCCACGTGTTGAGCGAACAG
GAAGAAGGGCTGCTCGCAGAGGCGTCAGATGTTCTGTCATCTCCGTCCACAACATTCGGCATGCTCAACAACGCCGATAT
GGAATTTCCGGAAATCACCGATGAGAACGGGGAAAAACGCCAGATCACACACGGAAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGCGACGCATTCAAAGCTGTGTATGATACGTACGGCCGCTTTAAAAACACGCTTGCATCAACG
CTCAGCGGCGCCATCAAAAAAGATAATTTTTATGCAAAGGTTAAACATTATCAATCGGCCAGGGAAGCGGCCCTGTCGCG
CAACAGCATTCCCGAAGAGGTCTATGATAATCTCGTCAGCACGATCAATAAACACCTGCCGCTTCTTCACCGCTATGTTG
AGCTCAGAAAAAAAGTGCTCGAACTTGATGAAGTGCACATGTATGACCTCTACACGCCGCTTGTAAAAGATTCCGGCATG
AAAGTGACGTACGGGCAGGCGAAAGATTACATGATCAAAGGGCTCGCTCCTTTGGGTGAAGAATATACATCCATCCTCAA
AGAGGGGTTAAACAACCGCTGGGTTGATGTATATGAGAACAAAGGAAAACGGAGCGGGGCTTATTCTTCAGGCGCATACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTTAACAACCTGTTCACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGGAACTACAGCATCTTTGTCGCTGAAGTGGCTTCAAC
GACAAATGAGGCCCTTCTGGGGGACTATCTGCTGAACACGGTCGATGATGAAAAACAACGCCTTTATATTTTAAACCATA
TGCTTGAAGGGTTTAAAGGGACGGTTTTCAGACAAACGATGTTTGCCGAATTTGAACATGCGATTCATGTCAAAGCCCAA
GAAGGCGAGCCGCTTACACCTGAACTTTTAACGAGCATCTATTATGATTTAAACAAAAAGTACTTCGGAGAAAATATTGA
AATTGACAAAGAAATCGGTCTTGAATGGGCGAGAATCCCTCATTTCTACTACAATTATTATGTATATCAATATGCGACAG
GCTACAGCGCCGCCCAGGCCTTGAGCCAGCAGATTTTAAAGGAAGGGAAGCCGGCGGTTGACCGCTACATCGACTTCCTG
AAAGCCGGAAGCTCTGATTACCCGATTGAAGTGCTCAAAAAAGCGGGAGTCGACATGACGACTTCAGATCCGATCGAAGC
TGCATGCAAAAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTCCTGCTAAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

97.855

0.497

Multiple sequence alignment