Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CCX87_RS00675 Genome accession   NZ_CP021648
Coordinates   156475..158025 (-) Length   516 a.a.
NCBI ID   WP_087742992.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 151475..163025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS00660 - 151695..152900 (+) 1206 WP_087742989.1 ABC transporter substrate-binding protein -
  CCX87_RS00665 - 152940..154835 (+) 1896 WP_087742990.1 ABC transporter permease -
  CCX87_RS00670 - 154832..156340 (+) 1509 WP_087742991.1 ATP-binding cassette domain-containing protein -
  CCX87_RS00675 comM 156475..158025 (-) 1551 WP_087742992.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CCX87_RS00680 - 158236..158967 (+) 732 WP_087742993.1 TorF family putative porin -
  CCX87_RS00685 glnK 159014..159352 (+) 339 WP_086910987.1 P-II family nitrogen regulator -
  CCX87_RS00690 amt 159395..160834 (+) 1440 WP_087742994.1 ammonium transporter -
  CCX87_RS00695 glcE 161047..162168 (+) 1122 WP_198314740.1 glycolate oxidase subunit GlcE -
  CCX87_RS00700 - 162239..163024 (+) 786 WP_087742995.1 YoaK family protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 54306.16 Da        Isoelectric Point: 8.0460

>NTDB_id=232240 CCX87_RS00675 WP_087742992.1 156475..158025(-) (comM) [Acidovorax sp. T1]
MSLALVQSRALLGLEAPSVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGLLAASGQIDASRLAGHEFAGELSLSGQLRPVRGALATSLALRAQQVAVRLVLPPGSAEEAALVPDAQVYRA
RHLLDVVRQFLPAGSQDPIDDASATDDGWCLLHPTPLATQMTYADLSDVKGQAASKRALEIAAAGGHSLLMMGPPGSGKS
MLAQRFAGLLPAMTMEEALESAAVASLAGRFTPARWAQRPTCQPHHTASAVALVGGGSPPQPGEISLAHHGVLFLDEMPE
FPRAALEALREPLETGRVTIARAARRAEFPASFQLVAAMNPCPCGFLGAAQRACRCTPDQVARYQGKLSGPLLDRIDLHV
EVPALPANDLLNAPPGETSAAVRERVARARLAAITRQGKTNQALQGQEIDTHTALEPSAAQFLQTAAARLGWSARSTHRT
LKVARTIADLAGAASTQVAHVAEAVQYRRVLRGPAA

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=232240 CCX87_RS00675 WP_087742992.1 156475..158025(-) (comM) [Acidovorax sp. T1]
ATGAGTCTTGCATTGGTGCAAAGCCGCGCGCTTCTGGGGCTGGAGGCGCCCTCCGTCACCGTCGAGGTGCATCTGGCCAA
CGGGCTTCCCAGTTTCACGCTGGTCGGCCTGGCCGACGTGGAGGTGAAGGAGGCGCGCGAACGGGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCGCACAACAAGCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCTGGG
CGCTTTGACCTGCCCATTGCCCTGGGGCTGCTGGCCGCCAGCGGACAAATCGACGCCAGCCGCCTGGCCGGCCATGAATT
CGCGGGCGAGCTGTCGCTATCGGGCCAATTGCGCCCTGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCGCGCCCAGC
AGGTGGCGGTGCGCCTGGTGCTGCCGCCGGGCAGCGCCGAAGAAGCCGCCCTGGTGCCCGACGCACAGGTTTACCGCGCC
CGCCACCTGCTGGATGTCGTACGGCAGTTCCTGCCGGCAGGCAGCCAGGACCCCATCGACGACGCCAGCGCCACGGACGA
CGGCTGGTGCCTGCTCCACCCCACGCCGCTGGCCACACAGATGACCTATGCCGACCTGTCGGATGTCAAGGGCCAGGCGG
CATCCAAGCGCGCACTCGAAATCGCCGCCGCCGGTGGGCACAGCCTGCTGATGATGGGGCCGCCCGGCTCCGGCAAATCC
ATGCTGGCCCAGCGCTTTGCCGGGCTGCTGCCGGCCATGACCATGGAGGAGGCCCTGGAGAGCGCCGCCGTGGCCAGCCT
GGCCGGGCGCTTCACCCCCGCGCGCTGGGCGCAACGGCCCACCTGCCAGCCCCACCACACGGCATCGGCCGTGGCGCTGG
TGGGCGGGGGCTCGCCGCCGCAGCCTGGCGAAATATCGCTGGCCCACCATGGGGTGCTGTTTTTGGATGAGATGCCAGAG
TTTCCCCGCGCCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAAACCGGGCGCGTGACCATTGCACGGGCCGCGCGGCGGGC
GGAGTTTCCGGCCAGCTTTCAATTGGTGGCGGCCATGAACCCCTGCCCCTGCGGTTTTCTGGGCGCGGCACAGCGTGCCT
GCCGCTGCACGCCCGACCAGGTGGCGCGTTACCAGGGCAAGCTCAGCGGCCCCTTGCTGGACCGCATCGACCTGCATGTG
GAAGTGCCCGCCCTGCCCGCCAACGACCTGCTGAACGCACCACCGGGCGAGACCAGCGCCGCCGTGCGCGAGCGCGTGGC
CCGCGCGCGCCTGGCGGCCATCACCCGCCAGGGCAAAACCAACCAGGCGCTGCAGGGCCAGGAAATCGACACCCACACCG
CGCTGGAGCCCTCCGCCGCGCAGTTTCTGCAAACTGCCGCAGCGCGCCTGGGCTGGTCGGCCCGCAGCACGCACCGCACC
CTGAAGGTGGCGCGCACCATCGCCGACCTGGCGGGCGCCGCCAGCACCCAGGTGGCCCATGTGGCCGAGGCCGTGCAATA
CCGGCGCGTGCTGCGCGGGCCTGCGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-408)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.529

99.612

0.523
  comM Vibrio cholerae strain A1552

51.859

99.031

0.514
  comM Glaesserella parasuis strain SC1401

51.859

99.031

0.514
  comM Vibrio campbellii strain DS40M4

50.775

100

0.508
  comM Legionella pneumophila str. Paris

48.069

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.069

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.238

100

0.44

Multiple sequence alignment