Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | BEI_RS08245 | Genome accession | NZ_CP021435 |
| Coordinates | 1734306..1734608 (+) | Length | 100 a.a. |
| NCBI ID | WP_417340742.1 | Uniprot ID | - |
| Organism | Halomonas beimenensis strain NTU-111 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1721818..1751513 | 1734306..1734608 | within | 0 |
Gene organization within MGE regions
Location: 1721818..1751513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEI_RS08190 (BEI_1644) | - | 1721818..1722111 (+) | 294 | WP_097789057.1 | hypothetical protein | - |
| BEI_RS08195 (BEI_1645) | - | 1722348..1723928 (-) | 1581 | WP_097791037.1 | ribonuclease J | - |
| BEI_RS08200 (BEI_1646) | purU | 1724233..1725087 (+) | 855 | WP_097789058.1 | formyltetrahydrofolate deformylase | - |
| BEI_RS08205 (BEI_1647) | - | 1725124..1725795 (+) | 672 | WP_097789059.1 | energy-coupling factor ABC transporter permease | - |
| BEI_RS08210 (BEI_1648) | - | 1725951..1726280 (+) | 330 | WP_153045777.1 | hypothetical protein | - |
| BEI_RS08215 (BEI_1650) | - | 1726411..1727582 (+) | 1172 | WP_097789061.1 | IS3 family transposase | - |
| BEI_RS08220 (BEI_1651) | dinB | 1727760..1728815 (-) | 1056 | WP_097789062.1 | DNA polymerase IV | - |
| BEI_RS08225 (BEI_1652) | lexA | 1728880..1729539 (-) | 660 | WP_097789063.1 | transcriptional repressor LexA | - |
| BEI_RS08230 (BEI_1653) | - | 1729774..1730427 (+) | 654 | WP_097789064.1 | TetR/AcrR family transcriptional regulator | - |
| BEI_RS08235 (BEI_1654) | pilC | 1730651..1731883 (-) | 1233 | WP_097789065.1 | type II secretion system F family protein | Machinery gene |
| BEI_RS08240 (BEI_1655) | pilB | 1732074..1733867 (-) | 1794 | WP_420809732.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BEI_RS19470 | - | 1734204..1734315 (+) | 112 | Protein_1623 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BEI_RS08245 | pilA/pilA1 | 1734306..1734608 (+) | 303 | WP_417340742.1 | pilin | Machinery gene |
| BEI_RS08250 (BEI_1657) | - | 1735181..1736869 (-) | 1689 | WP_097789066.1 | PglL family O-oligosaccharyltransferase | - |
| BEI_RS08255 (BEI_1658) | - | 1737042..1738457 (+) | 1416 | WP_097789067.1 | MBL fold metallo-hydrolase RNA specificity domain-containing protein | - |
| BEI_RS08260 (BEI_1660) | - | 1738848..1739120 (-) | 273 | WP_193765181.1 | hypothetical protein | - |
| BEI_RS08265 (BEI_1661) | - | 1739322..1741364 (-) | 2043 | WP_227644648.1 | YjbH domain-containing protein | - |
| BEI_RS08270 (BEI_1662) | - | 1741406..1742176 (-) | 771 | WP_097789069.1 | capsule biosynthesis GfcC family protein | - |
| BEI_RS08275 (BEI_1663) | - | 1742197..1742805 (-) | 609 | WP_193765182.1 | YjbF family lipoprotein | - |
| BEI_RS19145 (BEI_1664) | - | 1742919..1743158 (-) | 240 | WP_193765183.1 | hypothetical protein | - |
| BEI_RS08285 (BEI_1665) | - | 1743604..1744734 (+) | 1131 | WP_097789071.1 | polysaccharide export protein | - |
| BEI_RS08290 (BEI_1666) | - | 1744734..1745171 (+) | 438 | WP_097789072.1 | low molecular weight protein-tyrosine-phosphatase | - |
| BEI_RS08295 (BEI_1667) | - | 1745239..1745580 (-) | 342 | WP_097789073.1 | four helix bundle protein | - |
| BEI_RS08300 (BEI_1668) | - | 1745681..1747885 (+) | 2205 | WP_097789074.1 | polysaccharide biosynthesis tyrosine autokinase | - |
| BEI_RS08305 (BEI_1669) | - | 1748149..1748958 (+) | 810 | WP_097789075.1 | Wzz/FepE/Etk N-terminal domain-containing protein | - |
| BEI_RS18970 | - | 1749052..1749291 (-) | 240 | WP_153045778.1 | hypothetical protein | - |
| BEI_RS08310 (BEI_1671) | - | 1749353..1750343 (+) | 991 | Protein_1638 | integrase core domain-containing protein | - |
| BEI_RS08315 (BEI_1673) | rfbB | 1750464..1751513 (+) | 1050 | WP_097789076.1 | dTDP-glucose 4,6-dehydratase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10048.14 Da Isoelectric Point: 3.8342
>NTDB_id=230741 BEI_RS08245 WP_417340742.1 1734306..1734608(+) (pilA/pilA1) [Halomonas beimenensis strain NTU-111]
MGRAQASEGLSVVSGVQLDVAEQVAQDGALTTNISLSPTLDGKYISGVTVASNGVITVSFDAGVHSGQTMTLTPTEANGQ
ITGWTCAGLADTAYLPSSCQ
MGRAQASEGLSVVSGVQLDVAEQVAQDGALTTNISLSPTLDGKYISGVTVASNGVITVSFDAGVHSGQTMTLTPTEANGQ
ITGWTCAGLADTAYLPSSCQ
Nucleotide
Download Length: 303 bp
>NTDB_id=230741 BEI_RS08245 WP_417340742.1 1734306..1734608(+) (pilA/pilA1) [Halomonas beimenensis strain NTU-111]
GTGGGTAGGGCGCAGGCCTCTGAAGGCTTGTCCGTAGTCTCTGGGGTGCAATTAGATGTTGCGGAGCAGGTTGCTCAAGA
CGGAGCATTGACTACTAATATTTCATTGTCCCCTACGCTGGATGGGAAATATATTAGCGGGGTGACAGTTGCATCGAATG
GTGTTATTACGGTAAGTTTTGACGCTGGTGTTCACAGTGGTCAAACCATGACATTGACACCCACGGAAGCAAATGGTCAA
ATTACTGGTTGGACGTGTGCCGGCTTAGCTGATACGGCCTACTTGCCAAGTTCATGCCAGTAA
GTGGGTAGGGCGCAGGCCTCTGAAGGCTTGTCCGTAGTCTCTGGGGTGCAATTAGATGTTGCGGAGCAGGTTGCTCAAGA
CGGAGCATTGACTACTAATATTTCATTGTCCCCTACGCTGGATGGGAAATATATTAGCGGGGTGACAGTTGCATCGAATG
GTGTTATTACGGTAAGTTTTGACGCTGGTGTTCACAGTGGTCAAACCATGACATTGACACCCACGGAAGCAAATGGTCAA
ATTACTGGTTGGACGTGTGCCGGCTTAGCTGATACGGCCTACTTGCCAAGTTCATGCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Eikenella corrodens VA1 |
42.241 |
100 |
0.49 |
| pilA2 | Legionella pneumophila str. Paris |
34.906 |
100 |
0.37 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
34.906 |
100 |
0.37 |
| comP | Acinetobacter baylyi ADP1 |
32.174 |
100 |
0.37 |