Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   CCK83_RS04600 Genome accession   NZ_CP021428
Coordinates   955749..956558 (-) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 950749..961558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04585 pilE 950968..951393 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  CCK83_RS04590 pilY2 951390..951872 (-) 483 WP_017400484.1 type IV pilin protein Machinery gene
  CCK83_RS04595 pilY1 951883..955737 (-) 3855 WP_213062791.1 PilC/PilY family type IV pilus protein Machinery gene
  CCK83_RS04600 pilX 955749..956558 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCK83_RS04605 pilW 956555..957556 (-) 1002 WP_017481717.1 PilW family protein Machinery gene
  CCK83_RS04610 pilV 957556..958116 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  CCK83_RS04615 fimU 958110..958583 (-) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  CCK83_RS04620 ispH 958753..959703 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CCK83_RS04625 gmk 959826..960455 (+) 630 WP_005804544.1 guanylate kinase -
  CCK83_RS04630 rpoZ 960528..960806 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  CCK83_RS20615 - 960845..961000 (+) 156 WP_014207816.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=230658 CCK83_RS04600 WP_017481716.1 955749..956558(-) (pilX) [Acinetobacter pittii strain HUMV-6483]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=230658 CCK83_RS04600 WP_017481716.1 955749..956558(-) (pilX) [Acinetobacter pittii strain HUMV-6483]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment