Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   CCK83_RS04605 Genome accession   NZ_CP021428
Coordinates   956555..957556 (-) Length   333 a.a.
NCBI ID   WP_017481717.1    Uniprot ID   A0A9X3QGF6
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951555..962556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04595 pilY1 951883..955737 (-) 3855 WP_213062791.1 PilC/PilY family type IV pilus protein Machinery gene
  CCK83_RS04600 pilX 955749..956558 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCK83_RS04605 pilW 956555..957556 (-) 1002 WP_017481717.1 PilW family protein Machinery gene
  CCK83_RS04610 pilV 957556..958116 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  CCK83_RS04615 fimU 958110..958583 (-) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  CCK83_RS04620 ispH 958753..959703 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CCK83_RS04625 gmk 959826..960455 (+) 630 WP_005804544.1 guanylate kinase -
  CCK83_RS04630 rpoZ 960528..960806 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  CCK83_RS20615 - 960845..961000 (+) 156 WP_014207816.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35814.49 Da        Isoelectric Point: 6.6395

>NTDB_id=230659 CCK83_RS04605 WP_017481717.1 956555..957556(-) (pilW) [Acinetobacter pittii strain HUMV-6483]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=230659 CCK83_RS04605 WP_017481717.1 956555..957556(-) (pilW) [Acinetobacter pittii strain HUMV-6483]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGACTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853

Multiple sequence alignment