Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   CCK83_RS04615 Genome accession   NZ_CP021428
Coordinates   958110..958583 (-) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953110..963583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04600 pilX 955749..956558 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCK83_RS04605 pilW 956555..957556 (-) 1002 WP_017481717.1 PilW family protein Machinery gene
  CCK83_RS04610 pilV 957556..958116 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  CCK83_RS04615 fimU 958110..958583 (-) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  CCK83_RS04620 ispH 958753..959703 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CCK83_RS04625 gmk 959826..960455 (+) 630 WP_005804544.1 guanylate kinase -
  CCK83_RS04630 rpoZ 960528..960806 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  CCK83_RS20615 - 960845..961000 (+) 156 WP_014207816.1 hypothetical protein -
  CCK83_RS04635 spoT 961016..963121 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=230661 CCK83_RS04615 WP_005067119.1 958110..958583(-) (fimU) [Acinetobacter pittii strain HUMV-6483]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=230661 CCK83_RS04615 WP_005067119.1 958110..958583(-) (fimU) [Acinetobacter pittii strain HUMV-6483]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTAGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATTACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885

Multiple sequence alignment