Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   CCK83_RS04590 Genome accession   NZ_CP021428
Coordinates   951390..951872 (-) Length   160 a.a.
NCBI ID   WP_017400484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946390..956872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04555 - 946474..947505 (+) 1032 WP_087400191.1 lipase secretion chaperone -
  CCK83_RS04560 lip 947621..948562 (+) 942 WP_087400193.1 lipase family alpha/beta hydrolase -
  CCK83_RS04565 rplS 948615..948983 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  CCK83_RS04570 trmD 949203..949958 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CCK83_RS04575 rimM 950001..950549 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  CCK83_RS04580 rpsP 950569..950820 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  CCK83_RS04585 pilE 950968..951393 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  CCK83_RS04590 pilY2 951390..951872 (-) 483 WP_017400484.1 type IV pilin protein Machinery gene
  CCK83_RS04595 pilY1 951883..955737 (-) 3855 WP_213062791.1 PilC/PilY family type IV pilus protein Machinery gene
  CCK83_RS04600 pilX 955749..956558 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17505.79 Da        Isoelectric Point: 8.4721

>NTDB_id=230656 CCK83_RS04590 WP_017400484.1 951390..951872(-) (pilY2) [Acinetobacter pittii strain HUMV-6483]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=230656 CCK83_RS04590 WP_017400484.1 951390..951872(-) (pilY2) [Acinetobacter pittii strain HUMV-6483]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

41.279

100

0.444

Multiple sequence alignment