Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CBP31_RS07655 Genome accession   NZ_CP021377
Coordinates   1761136..1762647 (-) Length   503 a.a.
NCBI ID   WP_087036013.1    Uniprot ID   A0A1Y0D4N8
Organism   Oceanisphaera profunda strain SM1222     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1756136..1767647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP31_RS07635 (CBP31_07625) ccoG 1757625..1759043 (+) 1419 WP_087036006.1 cytochrome c oxidase accessory protein CcoG -
  CBP31_RS07640 (CBP31_07630) - 1759110..1760078 (+) 969 WP_087036008.1 serine/threonine protein kinase -
  CBP31_RS07645 (CBP31_07635) - 1760119..1760721 (+) 603 WP_087036011.1 thiol:disulfide interchange protein DsbA/DsbL -
  CBP31_RS07650 (CBP31_07640) - 1760789..1761088 (-) 300 WP_174664627.1 hypothetical protein -
  CBP31_RS07655 (CBP31_07645) comM 1761136..1762647 (-) 1512 WP_087036013.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CBP31_RS07660 (CBP31_07650) ilvG 1763029..1764687 (+) 1659 WP_087038664.1 acetolactate synthase 2 catalytic subunit -
  CBP31_RS07665 (CBP31_07655) ilvM 1764690..1764944 (+) 255 WP_087036015.1 acetolactate synthase 2 small subunit -
  CBP31_RS07670 (CBP31_07660) ilvD 1765086..1766936 (+) 1851 WP_087036017.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54929.31 Da        Isoelectric Point: 7.1309

>NTDB_id=230251 CBP31_RS07655 WP_087036013.1 1761136..1762647(-) (comM) [Oceanisphaera profunda strain SM1222]
MSLAVVFARASLGVAAPLVTVEAHLANGLPAFNIVGLPETTVKEARDRVRSALLNSGFEFPARRITVNLAPADLPKEGGR
FDLPIAMAVLAASGQIPIANLDKLEFLGELALTGALRPIKGALPAVLAARDSQRFIILPEDNGAEAGMIQPSPARLASHL
LTITAWLRQEAELITPSAIEEQEPEQISDLCDVIGQEGGKRALEIAAAGQHNLLLLGPPGTGKSMLASRLPGLLPAMNEE
EALEIAAIRSICGENLEPHTWRLRAFRQPHHSSSAVALVGGGSFPRPGEISLAHNGVLFLDELTEFERRVLDALREPLET
HVISIARAARSVTFPACFQLIAAMNPSPCGHYQDGYSRSSPEQILRYLNKISGPFLDRFDLSVEVSLLPPGELSRPRAKA
ESSTEIRKRVLAARERQLLRAGKTNARLSAAELERYCPLNQADAEFLEQALHRMKLSIRAWHKLIRVARTIADLEHKTDI
NRQHLIEALGYRAMDRLIQQLQF

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=230251 CBP31_RS07655 WP_087036013.1 1761136..1762647(-) (comM) [Oceanisphaera profunda strain SM1222]
ATGTCACTCGCCGTAGTTTTTGCTCGCGCCAGTTTAGGTGTGGCCGCACCCTTAGTGACAGTGGAAGCTCACCTTGCTAA
TGGCTTACCCGCCTTTAATATTGTTGGTTTACCTGAAACTACGGTCAAAGAAGCCAGAGACAGAGTACGTAGTGCGCTAT
TAAACTCTGGCTTTGAGTTCCCAGCTAGGCGTATTACCGTCAATCTGGCACCGGCAGATTTACCCAAAGAAGGCGGTCGT
TTCGACTTACCCATCGCCATGGCAGTTTTAGCCGCCTCAGGGCAAATCCCCATCGCCAATCTAGATAAGTTGGAATTCTT
AGGCGAGCTCGCCCTCACTGGTGCTCTAAGGCCAATAAAGGGCGCTTTGCCGGCCGTATTAGCGGCGCGCGATAGCCAAC
GCTTCATCATATTGCCCGAAGATAACGGCGCTGAAGCAGGCATGATCCAACCGAGCCCTGCAAGGCTGGCCAGCCATCTG
TTAACCATCACCGCTTGGTTACGCCAAGAAGCTGAGCTAATCACTCCCAGCGCCATCGAGGAGCAAGAACCAGAGCAGAT
AAGCGACTTGTGTGACGTGATCGGCCAAGAAGGCGGTAAACGCGCCCTAGAAATAGCCGCCGCCGGTCAGCACAACTTAT
TGCTCTTGGGCCCACCCGGTACCGGTAAAAGTATGCTGGCTAGCCGTCTACCCGGTTTATTGCCCGCCATGAATGAAGAG
GAGGCCCTAGAAATCGCCGCCATTCGCTCTATTTGTGGCGAAAACCTGGAGCCACACACTTGGCGGTTACGCGCCTTTCG
CCAACCTCATCATTCTTCCTCTGCCGTCGCCTTAGTCGGCGGTGGCAGTTTTCCTCGGCCCGGAGAAATTTCACTGGCTC
ATAATGGAGTATTATTTTTAGATGAACTCACCGAATTTGAACGCCGGGTGTTGGATGCTTTGCGCGAGCCCCTCGAAACC
CATGTAATTTCGATTGCCCGCGCCGCCCGCAGTGTGACTTTTCCTGCCTGTTTTCAACTTATCGCCGCCATGAACCCTAG
CCCCTGCGGCCATTATCAAGACGGCTACAGCCGCAGCTCACCGGAGCAAATACTGCGCTACCTCAATAAAATATCTGGCC
CCTTCTTAGACCGCTTTGATTTATCGGTAGAGGTGTCTTTACTGCCCCCCGGCGAACTGAGCAGGCCCAGAGCTAAAGCT
GAGTCGTCTACTGAAATTCGCAAACGGGTACTGGCCGCTCGTGAACGACAGCTACTGCGCGCCGGCAAAACTAACGCCAG
ATTAAGTGCCGCAGAATTAGAGCGCTATTGCCCACTCAACCAAGCGGATGCTGAGTTTCTAGAACAAGCGCTGCATCGTA
TGAAACTCTCTATCCGCGCCTGGCATAAGCTAATCCGCGTAGCGCGCACCATAGCCGACTTAGAACATAAAACAGACATT
AACCGCCAACACTTAATTGAAGCACTGGGTTATCGCGCCATGGACCGACTCATACAGCAGCTGCAGTTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0D4N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.96

99.801

0.598
  comM Glaesserella parasuis strain SC1401

58.939

100

0.596
  comM Haemophilus influenzae Rd KW20

58.103

100

0.584
  comM Vibrio campbellii strain DS40M4

57.968

99.801

0.579
  comM Legionella pneumophila str. Paris

48.185

98.608

0.475
  comM Legionella pneumophila strain ERS1305867

48.185

98.608

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.443

Multiple sequence alignment