Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B9G99_RS07275 Genome accession   NZ_CP021323
Coordinates   1560308..1561816 (+) Length   502 a.a.
NCBI ID   WP_086621450.1    Uniprot ID   -
Organism   Kushneria konosiri strain X49     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555308..1566816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9G99_RS07265 (B9G99_07255) - 1557032..1558147 (+) 1116 WP_086621448.1 metallophosphoesterase -
  B9G99_RS07270 (B9G99_07260) dld 1558437..1560203 (+) 1767 WP_086621449.1 D-lactate dehydrogenase -
  B9G99_RS07275 (B9G99_07265) comM 1560308..1561816 (+) 1509 WP_086621450.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B9G99_RS07280 (B9G99_07270) - 1562081..1562425 (-) 345 WP_148663924.1 hypothetical protein -
  B9G99_RS07285 (B9G99_07275) - 1562679..1563863 (-) 1185 WP_086621452.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  B9G99_RS07290 (B9G99_07280) treA 1564160..1565764 (+) 1605 WP_158521454.1 alpha,alpha-trehalase TreA -
  B9G99_RS07295 (B9G99_07285) - 1565896..1566483 (+) 588 WP_086621454.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53385.47 Da        Isoelectric Point: 6.9543

>NTDB_id=229831 B9G99_RS07275 WP_086621450.1 1560308..1561816(+) (comM) [Kushneria konosiri strain X49]
MLAIIPTRASVGLAAPEVVVEVHLSNGLPGLAIVGLPEAAVKESRERVRSALINAGFEFPAKRITLNLAPADLPKEGGRF
DLPIALGILVASGQIPQEAVGRLECVGELALDGQLRAVTGVLPAALAVAEAGRQLLLPTANADEAALAGDLDVLPVSSLL
EVVAHLTGERRIAPHQLTEPPMATLAAADLCDVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLAGILPPLTES
ESLEVAAIRSVCGLDILERWGQRPFRAPHHGASPAALVGGGSRPRPGEISLAHQGVLFLDELPEFDRKVLEAMREPLESG
KVHIARASHQREYPARFQLVAAMNPCPCGHLGDPRQQCSCTPNQIQRYQARLSGPLLDRIDLQIEVPALPAEQLTAKTQG
ENSETVRARVMAARRIQYARGGLNAHLSTSELEAACALGDDERAWLSGVLARLNLSARAYHRVLKVARTIADLNGEEKVD
KGALMEAIGYRQLDRMMGRGNI

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=229831 B9G99_RS07275 WP_086621450.1 1560308..1561816(+) (comM) [Kushneria konosiri strain X49]
ATGCTTGCGATTATCCCCACCCGTGCCAGCGTCGGGCTGGCGGCCCCCGAAGTCGTCGTTGAAGTGCATCTTTCCAACGG
GCTGCCGGGATTGGCCATCGTGGGGTTGCCCGAGGCGGCAGTGAAGGAGAGCCGCGAGCGGGTACGCAGCGCGCTGATCA
ACGCAGGCTTCGAGTTTCCCGCCAAACGCATCACTCTCAACCTGGCGCCGGCTGACCTGCCCAAGGAAGGCGGGCGGTTT
GATCTGCCGATTGCACTCGGCATTCTGGTGGCCTCGGGGCAGATTCCGCAGGAGGCCGTTGGCAGGCTGGAGTGCGTAGG
TGAATTGGCGCTTGATGGTCAGCTGCGTGCCGTGACCGGCGTCCTGCCGGCGGCGCTGGCGGTGGCGGAGGCCGGGCGCC
AGCTGCTGTTGCCCACCGCCAACGCTGATGAAGCCGCACTGGCCGGCGATCTGGACGTGCTGCCGGTCTCCAGTCTGCTG
GAGGTGGTGGCCCATCTCACCGGCGAGCGTCGTATCGCCCCGCATCAGCTGACCGAGCCCCCGATGGCGACGCTTGCGGC
GGCGGATCTGTGTGACGTGCGCGGTCAGCATCAGGCGCGCCGCGCGCTGGAGGTCGCCGCGGCCGGTGGCCATAACCTGC
TTTTCGCAGGCCCGCCTGGCACCGGCAAGACCATGCTGGCGAGCCGTCTGGCGGGCATTCTGCCGCCGCTGACCGAGAGT
GAATCTCTGGAAGTCGCGGCGATTCGCTCGGTCTGCGGGCTCGATATTCTCGAGCGCTGGGGCCAGCGCCCGTTTCGCGC
CCCGCATCATGGTGCCAGTCCCGCCGCGCTGGTGGGTGGCGGCTCAAGGCCCCGGCCGGGGGAGATCTCGCTGGCCCACC
AGGGCGTGCTCTTTCTGGATGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGGCCATGCGTGAGCCGCTGGAATCCGGA
AAAGTCCACATCGCTCGCGCCAGCCACCAGCGCGAATACCCGGCCCGCTTTCAACTGGTGGCGGCGATGAACCCGTGCCC
CTGCGGGCATTTGGGCGACCCGCGTCAGCAATGCAGCTGTACCCCCAATCAGATTCAGCGCTATCAGGCACGTCTTTCGG
GTCCGCTGCTCGATCGTATCGATCTACAGATCGAAGTCCCCGCACTGCCCGCGGAACAGCTGACGGCCAAAACGCAGGGC
GAGAACTCCGAGACCGTGCGTGCGCGCGTCATGGCCGCGCGAAGGATTCAGTACGCTCGCGGCGGGCTCAACGCACATCT
TTCCACCAGCGAGCTGGAAGCCGCCTGTGCGCTGGGCGATGACGAACGTGCGTGGCTCTCCGGCGTGCTGGCCCGGCTCA
ATCTCTCGGCGCGGGCGTATCACCGCGTGCTCAAGGTCGCGCGGACGATTGCAGATTTAAATGGTGAGGAAAAGGTTGAT
AAGGGCGCCCTGATGGAGGCGATCGGTTATCGCCAGCTGGATCGGATGATGGGGCGGGGGAATATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

99.402

0.56
  comM Vibrio campbellii strain DS40M4

56.313

99.402

0.56
  comM Haemophilus influenzae Rd KW20

54.257

100

0.546
  comM Glaesserella parasuis strain SC1401

54.257

100

0.546
  comM Legionella pneumophila str. Paris

51.303

99.402

0.51
  comM Legionella pneumophila strain ERS1305867

51.303

99.402

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.929

100

0.484

Multiple sequence alignment