Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CAY62_RS09655 Genome accession   NZ_CP021151
Coordinates   2116966..2117253 (-) Length   95 a.a.
NCBI ID   WP_086367256.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Na-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111966..2122253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY62_RS09630 (CAY62_09620) yfbR 2113180..2113764 (+) 585 WP_068947009.1 5'-deoxynucleotidase -
  CAY62_RS09635 (CAY62_09625) - 2113764..2115092 (+) 1329 WP_086367252.1 anti-phage deoxyguanosine triphosphatase -
  CAY62_RS09640 (CAY62_09630) - 2115269..2115889 (-) 621 WP_086367253.1 tRNA-uridine aminocarboxypropyltransferase -
  CAY62_RS09645 (CAY62_09635) rrtA 2115899..2116456 (+) 558 WP_086367254.1 rhombosortase -
  CAY62_RS09650 (CAY62_09640) - 2116543..2116881 (+) 339 WP_086367255.1 DUF1971 domain-containing protein -
  CAY62_RS09655 (CAY62_09645) comEA 2116966..2117253 (-) 288 WP_086367256.1 ComEA family DNA-binding protein Machinery gene
  CAY62_RS09660 (CAY62_09650) ppiD 2117416..2119314 (-) 1899 WP_086367257.1 peptidylprolyl isomerase -
  CAY62_RS09665 (CAY62_09655) hupB 2119665..2119937 (-) 273 WP_005298263.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10506.22 Da        Isoelectric Point: 6.3453

>NTDB_id=228602 CAY62_RS09655 WP_086367256.1 2116966..2117253(-) (comEA) [Photobacterium damselae subsp. damselae strain KC-Na-1]
MKQGFVTVVMTLAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKG
IGPSTVEKNRDRIEL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=228602 CAY62_RS09655 WP_086367256.1 2116966..2117253(-) (comEA) [Photobacterium damselae subsp. damselae strain KC-Na-1]
ATGAAACAAGGATTTGTTACTGTAGTAATGACATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTA
CGAAGATATTGAAATTGTTGTCAATATTAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAG
ATAAGGCTGAAAATATTATTCAATATCGTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGC
ATTGGCCCCTCAACCGTAGAAAAAAACCGCGATCGCATTGAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

53.261

96.842

0.516
  comEA Vibrio parahaemolyticus RIMD 2210633

52.747

95.789

0.505
  comEA Vibrio cholerae C6706

45.545

100

0.484
  comEA Vibrio cholerae strain A1552

45.545

100

0.484
  comEA Acinetobacter baylyi ADP1

57.812

67.368

0.389

Multiple sequence alignment