Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B9P52_RS31555 Genome accession   NZ_CP020917
Coordinates   6816516..6818042 (-) Length   508 a.a.
NCBI ID   WP_088448318.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain PR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6811516..6823042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9P52_RS31530 (B9P52_31530) - 6811679..6812020 (-) 342 WP_087881462.1 integration host factor subunit alpha -
  B9P52_RS31535 (B9P52_31535) pheT 6812024..6814441 (-) 2418 WP_062680690.1 phenylalanine--tRNA ligase subunit beta -
  B9P52_RS31540 (B9P52_31540) pheS 6814455..6815477 (-) 1023 WP_062680692.1 phenylalanine--tRNA ligase subunit alpha -
  B9P52_RS31545 (B9P52_31545) rplT 6815555..6815914 (-) 360 WP_006218741.1 50S ribosomal protein L20 -
  B9P52_RS31550 (B9P52_31550) rpmI 6815930..6816127 (-) 198 WP_006218740.1 50S ribosomal protein L35 -
  B9P52_RS31555 (B9P52_31555) comM 6816516..6818042 (-) 1527 WP_088448318.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B9P52_RS31560 (B9P52_31560) - 6818214..6818465 (-) 252 WP_043545227.1 accessory factor UbiK family protein -
  B9P52_RS31565 (B9P52_31565) - 6818599..6819591 (-) 993 WP_157672773.1 IS110 family transposase -
  B9P52_RS31570 (B9P52_31570) - 6819812..6820747 (-) 936 WP_088448320.1 alpha/beta fold hydrolase -
  B9P52_RS31575 (B9P52_31575) - 6820842..6821423 (+) 582 WP_088448321.1 CGNR zinc finger domain-containing protein -
  B9P52_RS31580 (B9P52_31580) - 6821434..6822396 (-) 963 WP_088448322.1 zinc-dependent alcohol dehydrogenase family protein -
  B9P52_RS31585 (B9P52_31585) - 6822460..6822762 (-) 303 WP_062680702.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52919.02 Da        Isoelectric Point: 8.6131

>NTDB_id=227149 B9P52_RS31555 WP_088448318.1 6816516..6818042(-) (comM) [Achromobacter denitrificans strain PR1]
MTLAVLASRALCGLDTHAVRVETHLGPGLPGFNVVGLPDTEVRESRERVRAAILNSGFEFPPGRITVNLSPADLPKESGR
FDLPIALGVLLASGQLAAQAEGAPDARAPAPALADLVLAGELSLTGALVPVAAPLVIALGVAREAPGATLILPAGSAEQA
AWVPDLRVLSARSLADVAAHAAGACRLPDAIPRPWPAAPPAACLSDVRGQPGARRALEVAAAGAHSLLMIGPPGAGKSML
AARLPGLLPPLARREALEAAAVAALAGLPDAPMGQPPFRAPHHSASVAALVGGGSRPRPGEISLAHRGVLFLDELPEFNR
RTLEALREPLEAGRVVIARALHSARFPARFQLVAAMNPCPCGWRGHPARACACSPDQAARYVGRVSGPLLDRIDLHVALP
PSDPDWMSGPPGEPSEPVRERVARCRERQLARQGKPNAALEGAELDEHCRMDGEARALLSQAMRRLAGSARALHRALRVA
RTIADLDGEERLAASHVAQAVQYRRPGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=227149 B9P52_RS31555 WP_088448318.1 6816516..6818042(-) (comM) [Achromobacter denitrificans strain PR1]
TTGACGCTAGCCGTTCTAGCCAGCCGTGCCCTTTGCGGCCTGGACACCCACGCGGTGCGCGTGGAGACGCATCTGGGGCC
CGGGCTGCCCGGCTTCAACGTGGTGGGCTTGCCGGACACGGAGGTGCGCGAGAGCCGCGAGCGAGTGCGTGCCGCCATCC
TCAATAGCGGCTTCGAATTTCCGCCGGGCCGCATCACCGTCAATCTTTCGCCGGCCGACCTCCCCAAGGAGTCCGGCCGC
TTCGACCTGCCCATCGCCCTGGGCGTGTTGCTGGCGTCGGGGCAATTGGCCGCCCAGGCGGAGGGCGCCCCGGATGCGCG
CGCGCCGGCTCCGGCGCTGGCCGACCTGGTGCTGGCCGGCGAGCTGTCGTTGACGGGGGCGCTGGTGCCGGTGGCCGCGC
CGCTGGTCATCGCGCTGGGCGTGGCGCGCGAGGCGCCTGGCGCCACGCTCATCCTGCCGGCCGGCAGCGCCGAGCAGGCG
GCCTGGGTGCCGGACCTGCGGGTGTTGTCCGCGCGCAGTCTGGCCGACGTGGCCGCGCACGCGGCCGGAGCCTGCCGGCT
GCCCGATGCCATTCCCAGGCCCTGGCCGGCGGCGCCGCCGGCGGCGTGCCTGTCGGACGTGCGCGGCCAGCCGGGGGCGC
GGCGGGCGCTGGAGGTCGCGGCGGCGGGAGCGCACAGCCTGCTGATGATCGGTCCGCCGGGCGCGGGCAAGAGCATGCTG
GCCGCGCGCCTGCCGGGCTTGCTGCCGCCCCTGGCGCGGCGGGAGGCGCTGGAAGCCGCGGCGGTGGCGGCCCTGGCGGG
CCTGCCCGACGCGCCGATGGGGCAGCCGCCGTTCCGGGCGCCGCACCATTCCGCGTCCGTCGCGGCGCTGGTGGGCGGGG
GCAGTCGGCCGCGCCCAGGCGAAATCAGTCTGGCGCATCGAGGGGTGCTGTTCCTGGACGAGCTGCCGGAATTCAACCGC
CGAACGCTCGAAGCCTTGCGCGAACCGCTGGAAGCGGGCAGGGTGGTCATCGCCCGGGCGCTGCATTCGGCGCGGTTCCC
CGCCCGGTTCCAGCTGGTCGCGGCCATGAACCCATGCCCTTGCGGCTGGCGCGGACATCCGGCCCGGGCCTGCGCCTGCT
CTCCCGACCAGGCGGCGCGCTATGTGGGCAGGGTGTCCGGCCCCTTGCTGGATCGCATCGATCTGCACGTGGCCCTGCCG
CCCTCCGACCCGGATTGGATGAGCGGCCCGCCGGGCGAGCCCTCGGAGCCCGTGCGCGAGCGCGTGGCGCGTTGCCGCGA
GCGCCAACTGGCCCGCCAGGGCAAGCCGAACGCCGCCCTGGAGGGCGCCGAACTGGACGAGCATTGCCGCATGGATGGCG
AGGCCCGGGCCCTGCTGTCGCAGGCCATGCGCCGGCTGGCCGGGTCGGCCCGGGCCCTGCACCGGGCGCTGCGGGTTGCC
CGGACTATTGCCGACCTGGACGGCGAGGAGCGGCTGGCGGCGTCCCACGTCGCCCAGGCCGTGCAATACCGGCGGCCGGG
AGTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.828

100

0.492
  comM Vibrio campbellii strain DS40M4

47.843

100

0.48
  comM Haemophilus influenzae Rd KW20

47.082

100

0.476
  comM Glaesserella parasuis strain SC1401

44.961

100

0.457
  comM Legionella pneumophila str. Paris

44.227

100

0.445
  comM Legionella pneumophila strain ERS1305867

44.227

100

0.445
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.166

100

0.429

Multiple sequence alignment