Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | B5P37_RS00040 | Genome accession | NZ_CP020773 |
| Coordinates | 3624..3947 (-) | Length | 107 a.a. |
| NCBI ID | WP_085235899.1 | Uniprot ID | A0AAC9WIF0 |
| Organism | Staphylococcus lutrae strain ATCC 700373 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..8947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B5P37_RS00010 (B5P37_00010) | gcvT | 570..1661 (-) | 1092 | WP_085235889.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| B5P37_RS00015 (B5P37_00015) | - | 1820..2347 (-) | 528 | WP_085235891.1 | shikimate kinase | - |
| B5P37_RS00020 (B5P37_00020) | - | 2344..2532 (-) | 189 | WP_085235893.1 | hypothetical protein | - |
| B5P37_RS00025 (B5P37_00025) | - | 2510..2863 (-) | 354 | WP_244898617.1 | ComGF family competence protein | - |
| B5P37_RS00035 (B5P37_00035) | comGD | 3203..3646 (-) | 444 | WP_085235897.1 | competence type IV pilus minor pilin ComGD | - |
| B5P37_RS00040 (B5P37_00040) | comGC | 3624..3947 (-) | 324 | WP_085235899.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| B5P37_RS00045 (B5P37_00045) | comGB | 3958..5025 (-) | 1068 | WP_085235901.1 | competence type IV pilus assembly protein ComGB | - |
| B5P37_RS00050 (B5P37_00050) | comGA | 4994..5968 (-) | 975 | WP_085235903.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| B5P37_RS00055 (B5P37_00055) | - | 6036..6665 (-) | 630 | WP_085235905.1 | MBL fold metallo-hydrolase | - |
| B5P37_RS00060 (B5P37_00060) | - | 6678..6989 (-) | 312 | WP_085235908.1 | MTH1187 family thiamine-binding protein | - |
| B5P37_RS00065 (B5P37_00065) | - | 6990..7976 (-) | 987 | WP_085235910.1 | ROK family glucokinase | - |
| B5P37_RS00070 (B5P37_00070) | - | 7973..8176 (-) | 204 | WP_085235912.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 12006.11 Da Isoelectric Point: 8.5042
>NTDB_id=225812 B5P37_RS00040 WP_085235899.1 3624..3947(-) (comGC) [Staphylococcus lutrae strain ATCC 700373]
MFQKLKSKFTRKEGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCAAQLKMVDSQIEAYTLKFNRQPASIDDLVH
EGYIKENQKNCKSGEAITVRDGEAVAS
MFQKLKSKFTRKEGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCAAQLKMVDSQIEAYTLKFNRQPASIDDLVH
EGYIKENQKNCKSGEAITVRDGEAVAS
Nucleotide
Download Length: 324 bp
>NTDB_id=225812 B5P37_RS00040 WP_085235899.1 3624..3947(-) (comGC) [Staphylococcus lutrae strain ATCC 700373]
ATGTTTCAAAAGTTAAAATCAAAATTTACTCGTAAGGAAGGGTTTACCCTTATTGAAATGTTGCTTGTTTTATTAATTAT
CAGCGTCCTTTTAATCCTGATTATCCCAAATATCGCTAAGCAATCAGAACATATACAAAAAACAGGCTGTGCCGCACAGT
TAAAAATGGTAGATAGTCAAATTGAAGCCTACACGTTAAAGTTTAATAGACAACCGGCTTCAATAGACGATCTCGTTCAT
GAAGGCTATATAAAAGAAAATCAAAAAAACTGTAAATCAGGAGAGGCAATAACAGTTAGAGATGGAGAAGCCGTTGCGTC
GTGA
ATGTTTCAAAAGTTAAAATCAAAATTTACTCGTAAGGAAGGGTTTACCCTTATTGAAATGTTGCTTGTTTTATTAATTAT
CAGCGTCCTTTTAATCCTGATTATCCCAAATATCGCTAAGCAATCAGAACATATACAAAAAACAGGCTGTGCCGCACAGT
TAAAAATGGTAGATAGTCAAATTGAAGCCTACACGTTAAAGTTTAATAGACAACCGGCTTCAATAGACGATCTCGTTCAT
GAAGGCTATATAAAAGAAAATCAAAAAAACTGTAAATCAGGAGAGGCAATAACAGTTAGAGATGGAGAAGCCGTTGCGTC
GTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
69.159 |
100 |
0.692 |
| comGC | Staphylococcus aureus MW2 |
69.159 |
100 |
0.692 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
44.086 |
86.916 |
0.383 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
47.674 |
80.374 |
0.383 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.316 |
71.028 |
0.364 |
| comGC/cglC | Streptococcus mitis SK321 |
51.316 |
71.028 |
0.364 |
| comYC | Streptococcus suis isolate S10 |
52 |
70.093 |
0.364 |