Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B5S50_RS10825 Genome accession   NZ_CP020473
Coordinates   2333269..2333709 (-) Length   146 a.a.
NCBI ID   WP_013240841.1    Uniprot ID   A0A1A6AQ48
Organism   Clostridium sp. 001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2328269..2338709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S50_RS10800 (B5S50_10715) rplI 2329063..2329506 (-) 444 WP_013240836.1 50S ribosomal protein L9 -
  B5S50_RS10805 (B5S50_10720) - 2329507..2331492 (-) 1986 WP_065078759.1 DHH family phosphoesterase -
  B5S50_RS10810 (B5S50_10725) - 2331511..2332497 (-) 987 WP_065078760.1 YybS family protein -
  B5S50_RS10815 (B5S50_10730) - 2332509..2332826 (-) 318 WP_013240839.1 MazG-like family protein -
  B5S50_RS10820 (B5S50_10735) rpsR 2332990..2333247 (-) 258 WP_013240840.1 30S ribosomal protein S18 -
  B5S50_RS10825 (B5S50_10740) ssbA 2333269..2333709 (-) 441 WP_013240841.1 single-stranded DNA-binding protein Machinery gene
  B5S50_RS10830 (B5S50_10745) rpsF 2333722..2334009 (-) 288 WP_063557096.1 30S ribosomal protein S6 -
  B5S50_RS10835 (B5S50_10750) - 2334114..2334326 (-) 213 WP_065078761.1 DUF951 domain-containing protein -
  B5S50_RS10840 (B5S50_10755) - 2334330..2335220 (-) 891 WP_217301830.1 mechanosensitive ion channel family protein -
  B5S50_RS10845 (B5S50_10760) - 2335236..2335487 (-) 252 WP_065078763.1 DUF3343 domain-containing protein -
  B5S50_RS10850 (B5S50_10765) - 2336101..2337445 (-) 1345 Protein_2142 transposase -
  B5S50_RS10855 (B5S50_10770) ytvI 2337623..2338678 (+) 1056 WP_065078764.1 sporulation integral membrane protein YtvI -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16410.28 Da        Isoelectric Point: 4.8280

>NTDB_id=223583 B5S50_RS10825 WP_013240841.1 2333269..2333709(-) (ssbA) [Clostridium sp. 001]
MNKVVLIGRLTKDPELRFTPGNGTAVTTFTIAVDRRFSKDGQKEADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRN
YEAKDGTRRYVTEVIAEEVQFLEWGEKSAKNSYNQTSSENFGKTQNFDENIYGEDITPVDDGDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=223583 B5S50_RS10825 WP_013240841.1 2333269..2333709(-) (ssbA) [Clostridium sp. 001]
TTGAATAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCAGAATTGAGATTTACACCAGGAAATGGTACAGCAGTTAC
CACTTTTACTATAGCCGTTGATAGGAGATTTTCTAAGGATGGACAAAAAGAAGCGGATTTTATCCCTATAGTTGTATGGG
GAAAACAAGCTGAATCTACTGCAAATTATATGAGTAAAGGAAAACTTATAGGTATTAGTGGTAGAATCCAGACTAGAAAT
TATGAAGCTAAAGACGGTACTAGAAGATATGTTACTGAGGTTATTGCAGAAGAAGTTCAATTCCTAGAATGGGGAGAGAA
ATCTGCAAAGAACTCATATAATCAAACTTCATCTGAAAATTTTGGAAAAACTCAAAACTTTGATGAGAATATTTATGGAG
AGGATATTACTCCAGTAGATGATGGAGATATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A6AQ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.093

100

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

46.565

89.726

0.418
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.573

80.137

0.397
  ssbA Streptococcus mutans UA159

48.333

82.192

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.427

70.548

0.37
  ssb Vibrio cholerae strain A1552

30.508

100

0.37

Multiple sequence alignment