Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6J88_RS19425 Genome accession   NZ_CP020452
Coordinates   1057588..1059084 (-) Length   498 a.a.
NCBI ID   WP_060975015.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1052588..1064084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS19390 (A6J88_05305) - 1052642..1053352 (+) 711 WP_060975018.1 SAM-dependent methyltransferase -
  A6J88_RS19395 (A6J88_05310) - 1053476..1054300 (-) 825 WP_039408878.1 undecaprenyl-diphosphate phosphatase -
  A6J88_RS19405 (A6J88_05320) dsbA1 1054514..1055158 (-) 645 WP_080613727.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6J88_RS19410 (A6J88_05325) - 1055169..1056263 (-) 1095 WP_060975016.1 SPOR domain-containing protein -
  A6J88_RS19415 (A6J88_05330) - 1056568..1056783 (+) 216 Protein_987 transposase -
  A6J88_RS19425 (A6J88_05340) comM 1057588..1059084 (-) 1497 WP_060975015.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6J88_RS19430 (A6J88_05345) - 1059098..1059418 (-) 321 WP_003757162.1 accessory factor UbiK family protein -
  A6J88_RS19440 (A6J88_05355) - 1059618..1060682 (-) 1065 WP_060975013.1 DUF1176 domain-containing protein -
  A6J88_RS19445 (A6J88_05360) - 1060873..1061280 (-) 408 WP_045072442.1 YMGG-like glycine zipper-containing protein -
  A6J88_RS19450 (A6J88_05365) - 1061543..1061635 (-) 93 WP_016687493.1 methionine/alanine import family NSS transporter small subunit -
  A6J88_RS19455 (A6J88_05370) - 1061632..1063167 (-) 1536 WP_080613728.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53573.66 Da        Isoelectric Point: 7.8571

>NTDB_id=223300 A6J88_RS19425 WP_060975015.1 1057588..1059084(-) (comM) [Neisseria mucosa strain FDAARGOS_260]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAPEKLAQYEFAGELALSGMLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTACQVPHRSSENAKLPDLIDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAVVLARVIAARDKQYARQGKVNAALSVSELDTSARIQKEAREALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVLKAVSFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=223300 A6J88_RS19425 WP_060975015.1 1057588..1059084(-) (comM) [Neisseria mucosa strain FDAARGOS_260]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCTCATTTCAATATCGTCGGATTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGCGTGCGCGCCGCCATCA
TCCAAAGCGGTTTCGACTTCCCTGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAATCGGGACGT
TTCGACCTGCCGATTGCGCTGGGCATCCTTGCCGCATCCGGACAAATCGCACCCGAAAAGCTCGCGCAATACGAGTTTGC
CGGCGAATTGGCGCTTTCCGGCATGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCGGGAC
GTTCTTTCGTCTTACCGCAGGAAAACGCAGAACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGTGCGCGTTCGTTA
GGTGAAGTCGCCGCCCATTTGAACGGTATCGAACCCTTGGCGCAAACCGCCTGCCAAGTCCCGCATAGGTCGTCTGAAAA
CGCCAAACTGCCCGACCTCATCGATGTCAAGGGTCAACATACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCGGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACGGGCAAATCCATGCTTTCCCAACGGCTGCCCGGCATTCTGCCGCCTTTG
ACCGAAGACGAATTGGTCGAGGTATGGGCATTGCGTTCGCTCCTGCCCAATCATCAGCAACAACTCGACAGCCACCGTCC
TTTCCGCAGCCCGCACCACAGTGCCAGTTCGGCAGCCATGGTCGGCGGCGGTTCTGACCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAGCTGCCCGAGTTTGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCTTTG
GAAAACGGCGAAATCCACATTTCCCGTGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCCGCCATGAA
CCCGTGTCCTTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGTA
AAATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGGGAAAGCAGCGCCGTCGTGTTGGCGCGCGTGATCGCCGCCCGCGACAAACAATACGCGCGGCAAGGCAAAGT
GAATGCCGCCTTGAGCGTCAGTGAACTCGACACGTCCGCCCGCATCCAAAAAGAAGCGCGGGAAGCCTTGGGTAGCCTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCATGTTTTGAAAGCCGTCAGCTTCCGCCGCGCGTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.6

100

0.528
  comM Glaesserella parasuis strain SC1401

49.203

100

0.496
  comM Haemophilus influenzae Rd KW20

49.203

100

0.496
  comM Legionella pneumophila str. Paris

47.117

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.117

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.438

Multiple sequence alignment